miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 47965 0.66 0.84029
Target:  5'- -cGCUGCGCgCGAgcacGUCGaccagggcgaacacgGCGUCGCAg -3'
miRNA:   3'- caUGACGCG-GCU----UAGCa--------------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 85559 0.71 0.54407
Target:  5'- cUGCgGCGCCGcgagguUCG-GCGCCGCGa -3'
miRNA:   3'- cAUGaCGCGGCuu----AGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 118117 0.71 0.554191
Target:  5'- -cGCUGCGCCGc--CGgcucGCGCCGCu- -3'
miRNA:   3'- caUGACGCGGCuuaGCa---CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 86235 0.71 0.564367
Target:  5'- gGUGCcGCaGCCGAugcagcGUCGUGUGCgCGCAc -3'
miRNA:   3'- -CAUGaCG-CGGCU------UAGCACGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 64829 0.7 0.574592
Target:  5'- -cGC-GCGCCGggUcCGcGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCuuA-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 59665 0.7 0.59516
Target:  5'- -gACUGCgGCCGggUCGUcgaaGCCGCc- -3'
miRNA:   3'- caUGACG-CGGCuuAGCAcg--CGGCGua -5'
23659 5' -57 NC_005261.1 + 95784 0.7 0.59516
Target:  5'- -cGCUGCGCCGGcgCGcugcuagccgGCGCCgGCGg -3'
miRNA:   3'- caUGACGCGGCUuaGCa---------CGCGG-CGUa -5'
23659 5' -57 NC_005261.1 + 106893 0.7 0.605489
Target:  5'- cUGCaGCGCCuGcGUCGUccGCGCCGCGg -3'
miRNA:   3'- cAUGaCGCGG-CuUAGCA--CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 64049 0.7 0.626201
Target:  5'- --uCUGCGCCGcGUgGUGCGCCa--- -3'
miRNA:   3'- cauGACGCGGCuUAgCACGCGGcgua -5'
23659 5' -57 NC_005261.1 + 58558 0.71 0.53401
Target:  5'- --cCUGCGCCG--UCGUG-GCCGCGa -3'
miRNA:   3'- cauGACGCGGCuuAGCACgCGGCGUa -5'
23659 5' -57 NC_005261.1 + 31786 0.71 0.524017
Target:  5'- gGUGCUGC-CCGcggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -CAUGACGcGGCuuag---CACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 83301 0.72 0.465747
Target:  5'- -gGCUGCGCgGggUCGUGCaGCUcggGCGg -3'
miRNA:   3'- caUGACGCGgCuuAGCACG-CGG---CGUa -5'
23659 5' -57 NC_005261.1 + 85991 0.78 0.219129
Target:  5'- -aGCUGCGCCGccgacggggcGUCGUGCGCCaGCAg -3'
miRNA:   3'- caUGACGCGGCu---------UAGCACGCGG-CGUa -5'
23659 5' -57 NC_005261.1 + 11120 0.76 0.286258
Target:  5'- ---aUGCGCCGGcagCGUGCGCCGCc- -3'
miRNA:   3'- caugACGCGGCUua-GCACGCGGCGua -5'
23659 5' -57 NC_005261.1 + 51718 0.75 0.336864
Target:  5'- -aGCUGCGggGggUCGUGCGCaCGCAg -3'
miRNA:   3'- caUGACGCggCuuAGCACGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 68878 0.74 0.368584
Target:  5'- ---gUGCGCCG--UCGUGCGCUGCGc -3'
miRNA:   3'- caugACGCGGCuuAGCACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 104411 0.74 0.393684
Target:  5'- -aGC-GCGCCGAAaCG-GCGCCGCAc -3'
miRNA:   3'- caUGaCGCGGCUUaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 88481 0.73 0.447074
Target:  5'- cGUGCcGCGCCGGAgc--GCGCCGCGc -3'
miRNA:   3'- -CAUGaCGCGGCUUagcaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 132955 0.73 0.447074
Target:  5'- -cGCUGCGCCGA--CGUG-GCCGCc- -3'
miRNA:   3'- caUGACGCGGCUuaGCACgCGGCGua -5'
23659 5' -57 NC_005261.1 + 70646 0.72 0.456359
Target:  5'- -cGCgGCGCUGAGguUCG-GCGCCGCGg -3'
miRNA:   3'- caUGaCGCGGCUU--AGCaCGCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.