miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 6360 0.66 0.831092
Target:  5'- ----cGCGCCGGucCG-GCGCCGCu- -3'
miRNA:   3'- caugaCGCGGCUuaGCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 10426 0.68 0.738587
Target:  5'- gGUGCUGUGCCcacgGAcgCGUGCugggaggcgcuGCUGCAg -3'
miRNA:   3'- -CAUGACGCGG----CUuaGCACG-----------CGGCGUa -5'
23659 5' -57 NC_005261.1 + 11120 0.76 0.286258
Target:  5'- ---aUGCGCCGGcagCGUGCGCCGCc- -3'
miRNA:   3'- caugACGCGGCUua-GCACGCGGCGua -5'
23659 5' -57 NC_005261.1 + 21751 0.69 0.636568
Target:  5'- cUGCUGCGCCuGGAgCGcGCGCCGgGc -3'
miRNA:   3'- cAUGACGCGG-CUUaGCaCGCGGCgUa -5'
23659 5' -57 NC_005261.1 + 29477 0.66 0.822535
Target:  5'- aGUACgcgGCGCUGGuggaccugguGUaCGcGCGCCGCGa -3'
miRNA:   3'- -CAUGa--CGCGGCU----------UA-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 30181 0.68 0.738587
Target:  5'- -cGCUgcGCGCCGAggCG-GcCGCCGCGc -3'
miRNA:   3'- caUGA--CGCGGCUuaGCaC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 31786 0.71 0.524017
Target:  5'- gGUGCUGC-CCGcggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -CAUGACGcGGCuuag---CACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 33370 0.66 0.813801
Target:  5'- -gGCcGCGCCGGGcugCGgGcCGCCGCAg -3'
miRNA:   3'- caUGaCGCGGCUUa--GCaC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 34362 0.67 0.748421
Target:  5'- -gGCcggGCGCCGcg-CG-GCGCCGCGc -3'
miRNA:   3'- caUGa--CGCGGCuuaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 36784 0.66 0.831092
Target:  5'- cGUGCguUGCGCCGAGacuuUGCGCCGg-- -3'
miRNA:   3'- -CAUG--ACGCGGCUUagc-ACGCGGCgua -5'
23659 5' -57 NC_005261.1 + 42048 1.05 0.003503
Target:  5'- gGUACUGCGCCGAAUCGUGCGCCGCAUu -3'
miRNA:   3'- -CAUGACGCGGCUUAGCACGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 44869 0.67 0.767767
Target:  5'- -aAgaGCGCCGccgCGaGCGCCGCGg -3'
miRNA:   3'- caUgaCGCGGCuuaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 46976 0.66 0.831092
Target:  5'- -cGCUGCcgccgcccGCCGGcagCGcGCGCCGCGc -3'
miRNA:   3'- caUGACG--------CGGCUua-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 47261 0.68 0.70855
Target:  5'- --cCUGCGCCGGcccgccggCGaagaGCGCCGCGUg -3'
miRNA:   3'- cauGACGCGGCUua------GCa---CGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 47698 0.66 0.831092
Target:  5'- -cGCgGCGCCGcGUCGgcgGCGUCGgGg -3'
miRNA:   3'- caUGaCGCGGCuUAGCa--CGCGGCgUa -5'
23659 5' -57 NC_005261.1 + 47965 0.66 0.84029
Target:  5'- -cGCUGCGCgCGAgcacGUCGaccagggcgaacacgGCGUCGCAg -3'
miRNA:   3'- caUGACGCG-GCU----UAGCa--------------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 51474 0.69 0.677915
Target:  5'- cUGCUgGCGCUGAucacCG-GCGCCGCGc -3'
miRNA:   3'- cAUGA-CGCGGCUua--GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 51718 0.75 0.336864
Target:  5'- -aGCUGCGggGggUCGUGCGCaCGCAg -3'
miRNA:   3'- caUGACGCggCuuAGCACGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 53539 0.66 0.831092
Target:  5'- cGUGUUGCGCUcu-UCGgccGCGCCGCGg -3'
miRNA:   3'- -CAUGACGCGGcuuAGCa--CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 58558 0.71 0.53401
Target:  5'- --cCUGCGCCG--UCGUG-GCCGCGa -3'
miRNA:   3'- cauGACGCGGCuuAGCACgCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.