miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 133829 0.66 0.831092
Target:  5'- -cGCUGCGCgGccgCGUgcGCGCCGUg- -3'
miRNA:   3'- caUGACGCGgCuuaGCA--CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 132955 0.73 0.447074
Target:  5'- -cGCUGCGCCGA--CGUG-GCCGCc- -3'
miRNA:   3'- caUGACGCGGCUuaGCACgCGGCGua -5'
23659 5' -57 NC_005261.1 + 132628 0.69 0.677915
Target:  5'- -cGCUgGCGCCGAGgacgCGgGCGCgGCGg -3'
miRNA:   3'- caUGA-CGCGGCUUa---GCaCGCGgCGUa -5'
23659 5' -57 NC_005261.1 + 131430 0.68 0.70855
Target:  5'- -aGCgGCGCCGGcgCcccccuUGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCUuaGc-----ACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 130733 0.68 0.70855
Target:  5'- -cGCUGcCGCCGAcaugAUCGccGCGCUGCu- -3'
miRNA:   3'- caUGAC-GCGGCU----UAGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 124252 0.66 0.839463
Target:  5'- -gGCagGCGCCGcg-CG-GCGCCGCc- -3'
miRNA:   3'- caUGa-CGCGGCuuaGCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 122717 0.66 0.839463
Target:  5'- -gGCcGCGCCGucgauguucacGUCG-GCGCCGCu- -3'
miRNA:   3'- caUGaCGCGGCu----------UAGCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 122688 0.68 0.688177
Target:  5'- -aGCUGCGCCugcuccAUCGccGCGCCGCc- -3'
miRNA:   3'- caUGACGCGGcu----UAGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 120958 0.68 0.728657
Target:  5'- -gGCUcGCGCCccgcggGGcgCGUGcCGCCGCAg -3'
miRNA:   3'- caUGA-CGCGG------CUuaGCAC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 120356 0.68 0.738587
Target:  5'- --cCUGCGCUGGA-CGgugcgcgacgGCGCCGCGc -3'
miRNA:   3'- cauGACGCGGCUUaGCa---------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 120225 0.68 0.718641
Target:  5'- -cAgaGCGCCGAcgUGgaGCGCCGCu- -3'
miRNA:   3'- caUgaCGCGGCUuaGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 120003 0.66 0.813801
Target:  5'- ----gGCGCCGGcuacgcggcCGUGUGCCGCGc -3'
miRNA:   3'- caugaCGCGGCUua-------GCACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 118908 0.68 0.738587
Target:  5'- --cCUGCGuCUGggUcCG-GCGCCGCGg -3'
miRNA:   3'- cauGACGC-GGCuuA-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 118117 0.71 0.554191
Target:  5'- -cGCUGCGCCGc--CGgcucGCGCCGCu- -3'
miRNA:   3'- caUGACGCGGCuuaGCa---CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 117632 0.66 0.804897
Target:  5'- -gACcGCGCCGGG-CccGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCUUaGcaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 113476 0.66 0.827691
Target:  5'- cUGCUGCGcCCGAAccugccgcugaugCGcGCGCUGCGa -3'
miRNA:   3'- cAUGACGC-GGCUUa------------GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 109187 0.66 0.839463
Target:  5'- -aGCaGCGCCGcGUCGgGCGUgCGCAg -3'
miRNA:   3'- caUGaCGCGGCuUAGCaCGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 108744 0.67 0.794918
Target:  5'- -gGCgGCGCCGcggCGUccgcggcGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCuuaGCA-------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 106893 0.7 0.605489
Target:  5'- cUGCaGCGCCuGcGUCGUccGCGCCGCGg -3'
miRNA:   3'- cAUGaCGCGG-CuUAGCA--CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 106693 0.7 0.626201
Target:  5'- -gGCcGCGCCGAucgCGUcccaGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCUua-GCA----CGCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.