miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23660 3' -60.6 NC_005261.1 + 100838 0.66 0.731894
Target:  5'- aGGCCgggagCUCGGCGACC------UGCGCGu -3'
miRNA:   3'- -CCGG-----GAGCCGCUGGaacuccACGCGC- -5'
23660 3' -60.6 NC_005261.1 + 71349 0.66 0.731894
Target:  5'- cGUCCUCGGUGAgCgccGAGa-GCGCGa -3'
miRNA:   3'- cCGGGAGCCGCUgGaa-CUCcaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 56411 0.66 0.731894
Target:  5'- cGCCCUgcgcuucgCGGCGcacccGCCUgcgGAGGcggcgGCGCa -3'
miRNA:   3'- cCGGGA--------GCCGC-----UGGAa--CUCCa----CGCGc -5'
23660 3' -60.6 NC_005261.1 + 29181 0.66 0.728081
Target:  5'- gGGCCCggcgcccucgccgCGGCGcCCgcgcGGGcGCGCGa -3'
miRNA:   3'- -CCGGGa------------GCCGCuGGaac-UCCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 74956 0.66 0.722337
Target:  5'- cGCgCUCGGCG-CgCUcGAGGccGCGCGc -3'
miRNA:   3'- cCGgGAGCCGCuG-GAaCUCCa-CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 43920 0.66 0.722337
Target:  5'- cGGCacaUCGGCGACaucucgGAGaccGUGCGCu -3'
miRNA:   3'- -CCGgg-AGCCGCUGgaa---CUC---CACGCGc -5'
23660 3' -60.6 NC_005261.1 + 121783 0.66 0.712707
Target:  5'- uGGCCgCggcCGGCGGgCUgggcaGGGG-GCGCGu -3'
miRNA:   3'- -CCGG-Ga--GCCGCUgGAa----CUCCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 1988 0.66 0.712707
Target:  5'- gGGCCaUCGGCGGCCaguucgcGGGGUccacgGCGuCGa -3'
miRNA:   3'- -CCGGgAGCCGCUGGaa-----CUCCA-----CGC-GC- -5'
23660 3' -60.6 NC_005261.1 + 31182 0.66 0.712707
Target:  5'- cGGCgCU-GGCGGCCUacugccgccccGAGGUcgcgGCGCGg -3'
miRNA:   3'- -CCGgGAgCCGCUGGAa----------CUCCA----CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 75822 0.66 0.712707
Target:  5'- uGCCCggcgCGGCcgcGCCcgggGAGGggcGCGCGg -3'
miRNA:   3'- cCGGGa---GCCGc--UGGaa--CUCCa--CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 32225 0.66 0.712707
Target:  5'- cGGCCgCggCGGUGGCCUUc---UGCGCGg -3'
miRNA:   3'- -CCGG-Ga-GCCGCUGGAAcuccACGCGC- -5'
23660 3' -60.6 NC_005261.1 + 73301 0.66 0.712707
Target:  5'- aGGCa---GGCGGCCagGGGGUGC-CGg -3'
miRNA:   3'- -CCGggagCCGCUGGaaCUCCACGcGC- -5'
23660 3' -60.6 NC_005261.1 + 97945 0.66 0.712707
Target:  5'- aGCUC-CGGCGGCaacgaggGAGGUG-GCGg -3'
miRNA:   3'- cCGGGaGCCGCUGgaa----CUCCACgCGC- -5'
23660 3' -60.6 NC_005261.1 + 97526 0.66 0.71174
Target:  5'- cGGCUCgccgcgaUCGGCGGCCccGGcGGUGC-CGg -3'
miRNA:   3'- -CCGGG-------AGCCGCUGGaaCU-CCACGcGC- -5'
23660 3' -60.6 NC_005261.1 + 1407 0.66 0.703013
Target:  5'- cGGCCgCggCGGCGGCg--GGGGcgGCGCc -3'
miRNA:   3'- -CCGG-Ga-GCCGCUGgaaCUCCa-CGCGc -5'
23660 3' -60.6 NC_005261.1 + 127629 0.66 0.701067
Target:  5'- cGGCCggacgcgacggCGGCGgcGCCggGGGGcGCGCGg -3'
miRNA:   3'- -CCGGga---------GCCGC--UGGaaCUCCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 33811 0.66 0.693262
Target:  5'- gGGCUugucuUUgGGCGGCCg-GGGG-GCGCGg -3'
miRNA:   3'- -CCGG-----GAgCCGCUGGaaCUCCaCGCGC- -5'
23660 3' -60.6 NC_005261.1 + 81896 0.66 0.687388
Target:  5'- cGGCCgccagcaugaacgCGGCcagcuccuCCUUGAGGUGCGgGa -3'
miRNA:   3'- -CCGGga-----------GCCGcu------GGAACUCCACGCgC- -5'
23660 3' -60.6 NC_005261.1 + 118822 0.66 0.686408
Target:  5'- cGCCCUgGGCGcggcacuGCCgcucugcggcgcgGAGGgcgGCGCGc -3'
miRNA:   3'- cCGGGAgCCGC-------UGGaa-----------CUCCa--CGCGC- -5'
23660 3' -60.6 NC_005261.1 + 90781 0.66 0.683464
Target:  5'- aGGCCgCUgCGGCGGCC----GGcGCGCGc -3'
miRNA:   3'- -CCGG-GA-GCCGCUGGaacuCCaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.