miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 134425 0.7 0.505525
Target:  5'- --uGCUGCUCcaCGC-UGCucGCGGGGCUg -3'
miRNA:   3'- cauUGACGAGc-GCGuACG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 37160 0.7 0.515267
Target:  5'- -cAGC-GCUCGCGCGcgcuUGCGCcuGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGU----ACGCGc-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 67861 0.7 0.525084
Target:  5'- -gAGCUGCUCGCgGCAacucccgggcgGCGCGGGuaaGCg -3'
miRNA:   3'- caUUGACGAGCG-CGUa----------CGCGCCC---CGa -5'
23667 3' -58.7 NC_005261.1 + 109238 0.7 0.525084
Target:  5'- --cGCUGCa-GCGCGgcccaGUGCGGGGCc -3'
miRNA:   3'- cauUGACGagCGCGUa----CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 33736 0.7 0.534971
Target:  5'- ---cCUGCcccUCGCGCG-GCGcCGGGGCc -3'
miRNA:   3'- cauuGACG---AGCGCGUaCGC-GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 46900 0.69 0.544923
Target:  5'- -cAGCcagGCcCGCGCAcGCacGCGGGGCUg -3'
miRNA:   3'- caUUGa--CGaGCGCGUaCG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 1271 0.69 0.564999
Target:  5'- gGUGACUGUgccgGCGCccagGCcgGCGGGGCUc -3'
miRNA:   3'- -CAUUGACGag--CGCGua--CG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 115922 0.69 0.564999
Target:  5'- -cGGCcGC-CGCGUccgcGCGCGGGGCa -3'
miRNA:   3'- caUUGaCGaGCGCGua--CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 50915 0.69 0.575111
Target:  5'- cGgcGCcGcCUCGC-CggGCGCGGGGCUc -3'
miRNA:   3'- -CauUGaC-GAGCGcGuaCGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 44258 0.69 0.575111
Target:  5'- -cGACgccGCggCGCGCGgggGgGCGGGGCc -3'
miRNA:   3'- caUUGa--CGa-GCGCGUa--CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 32058 0.69 0.575111
Target:  5'- -gGACaugGC-CGCGCAgagcgcgGCGCuGGGGCUc -3'
miRNA:   3'- caUUGa--CGaGCGCGUa------CGCG-CCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 135644 0.69 0.575111
Target:  5'- --cGCUGCUaccUGCGCggGCGCGGgcGGCc -3'
miRNA:   3'- cauUGACGA---GCGCGuaCGCGCC--CCGa -5'
23667 3' -58.7 NC_005261.1 + 63009 0.69 0.575111
Target:  5'- -cGGCgGC-CGCGCccGCGCGGGcGCc -3'
miRNA:   3'- caUUGaCGaGCGCGuaCGCGCCC-CGa -5'
23667 3' -58.7 NC_005261.1 + 4494 0.69 0.579167
Target:  5'- cGUAGcCUGCgcgggccccagucgCGCGCccGCGCGGGcGCc -3'
miRNA:   3'- -CAUU-GACGa-------------GCGCGuaCGCGCCC-CGa -5'
23667 3' -58.7 NC_005261.1 + 37217 0.69 0.584246
Target:  5'- uGUGGCUcccgcggGCUUGCGCG-GCGCGGcGCg -3'
miRNA:   3'- -CAUUGA-------CGAGCGCGUaCGCGCCcCGa -5'
23667 3' -58.7 NC_005261.1 + 105284 0.69 0.585263
Target:  5'- -cAGCgccgGCgagcccgggCGCGCGaGCGCGGGGUc -3'
miRNA:   3'- caUUGa---CGa--------GCGCGUaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 54145 0.68 0.595449
Target:  5'- --cGCcGCaCGCGgcCGUGCGCGGGGUUg -3'
miRNA:   3'- cauUGaCGaGCGC--GUACGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 111756 0.68 0.595449
Target:  5'- -gGGCaGCUCGUGCAccUGCGCugcgcgcccGGGGUg -3'
miRNA:   3'- caUUGaCGAGCGCGU--ACGCG---------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 57668 0.68 0.595449
Target:  5'- -aGACUGCgcgaGCGCcaGCcgGCGGGGCa -3'
miRNA:   3'- caUUGACGag--CGCGuaCG--CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 3812 0.68 0.60464
Target:  5'- -cAGCcGCUCGCGCGcUGcCGCGGGcccgggcGCUg -3'
miRNA:   3'- caUUGaCGAGCGCGU-AC-GCGCCC-------CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.