Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 75063 | 0.67 | 0.667087 |
Target: 5'- uGUAcACcGCgCGCGCcgGCG-GGGGCUc -3' miRNA: 3'- -CAU-UGaCGaGCGCGuaCGCgCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 86197 | 0.67 | 0.667087 |
Target: 5'- -gAGCggGCUcCGCGUcgGCGCgccgaaccGGGGCa -3' miRNA: 3'- caUUGa-CGA-GCGCGuaCGCG--------CCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 105113 | 0.67 | 0.667087 |
Target: 5'- -gGGCuUGCcCGCGCggGCGCGGGccGCc -3' miRNA: 3'- caUUG-ACGaGCGCGuaCGCGCCC--CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 134180 | 0.67 | 0.667087 |
Target: 5'- --cGCUGCUUGCGgAgggccugGCGCGGcucGGCg -3' miRNA: 3'- cauUGACGAGCGCgUa------CGCGCC---CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 67 | 0.67 | 0.667087 |
Target: 5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3' miRNA: 3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 90373 | 0.67 | 0.667087 |
Target: 5'- -----cGCUCGUGCGcgGCgaggccccgccgGCGGGGCUg -3' miRNA: 3'- cauugaCGAGCGCGUa-CG------------CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 137750 | 0.67 | 0.667087 |
Target: 5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3' miRNA: 3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 32372 | 0.67 | 0.667087 |
Target: 5'- -aGAC-GCUgGUGCAggcgcgGCGCGGcGGCg -3' miRNA: 3'- caUUGaCGAgCGCGUa-----CGCGCC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 73929 | 0.67 | 0.664026 |
Target: 5'- -cGACUGCgUGUGCcUGCuccggcuugcagacGCGGGGCg -3' miRNA: 3'- caUUGACGaGCGCGuACG--------------CGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 128097 | 0.67 | 0.656872 |
Target: 5'- uUAACggGCgagCgGCGCG-GCGCGGGGUc -3' miRNA: 3'- cAUUGa-CGa--G-CGCGUaCGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 93907 | 0.67 | 0.656872 |
Target: 5'- -cGACUGCggGCGCG-GCGCccgcGGGCUu -3' miRNA: 3'- caUUGACGagCGCGUaCGCGc---CCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 135680 | 0.67 | 0.656872 |
Target: 5'- -gAGgaGCUCuGCGCc-GCGCGGcGGCUa -3' miRNA: 3'- caUUgaCGAG-CGCGuaCGCGCC-CCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 123446 | 0.68 | 0.646637 |
Target: 5'- --cGCaGCUCGCGCAUGaCGCcgucgcGGGCc -3' miRNA: 3'- cauUGaCGAGCGCGUAC-GCGc-----CCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 130471 | 0.68 | 0.626141 |
Target: 5'- -gAGCgGCUCGCgGCGUGCcuCGGcGGCg -3' miRNA: 3'- caUUGaCGAGCG-CGUACGc-GCC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 101775 | 0.68 | 0.626141 |
Target: 5'- -----cGCcuccagCGCGCGUGCcgcccgGCGGGGCUg -3' miRNA: 3'- cauugaCGa-----GCGCGUACG------CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 21861 | 0.68 | 0.618968 |
Target: 5'- cUGAC-GCUCGCGCucgcgaacgcgcgccCGCGGGGCc -3' miRNA: 3'- cAUUGaCGAGCGCGuac------------GCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 112328 | 0.68 | 0.615896 |
Target: 5'- uUGGC--CUCGCGCGacUGCaaGCGGGGCa -3' miRNA: 3'- cAUUGacGAGCGCGU--ACG--CGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 71065 | 0.68 | 0.605663 |
Target: 5'- -cAGCcGC-CGCGCGgcGgGCGGGGCg -3' miRNA: 3'- caUUGaCGaGCGCGUa-CgCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 3812 | 0.68 | 0.60464 |
Target: 5'- -cAGCcGCUCGCGCGcUGcCGCGGGcccgggcGCUg -3' miRNA: 3'- caUUGaCGAGCGCGU-AC-GCGCCC-------CGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 125916 | 0.68 | 0.60464 |
Target: 5'- uGUGGCgggGCUCGCcacgcgcacgguaGCcgcugGCGCGGGGUc -3' miRNA: 3'- -CAUUGa--CGAGCG-------------CGua---CGCGCCCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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