miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 37160 0.7 0.515267
Target:  5'- -cAGC-GCUCGCGCGcgcuUGCGCcuGGGCg -3'
miRNA:   3'- caUUGaCGAGCGCGU----ACGCGc-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 37217 0.69 0.584246
Target:  5'- uGUGGCUcccgcggGCUUGCGCG-GCGCGGcGCg -3'
miRNA:   3'- -CAUUGA-------CGAGCGCGUaCGCGCCcCGa -5'
23667 3' -58.7 NC_005261.1 + 38208 0.66 0.741207
Target:  5'- cGUGcuGCUGCUcaacaccucgcucacCGUGCGga-GCGGGGCg -3'
miRNA:   3'- -CAU--UGACGA---------------GCGCGUacgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 41890 0.73 0.371037
Target:  5'- -cGGCguaCUCGCGCA-GCGUGGGGUUg -3'
miRNA:   3'- caUUGac-GAGCGCGUaCGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 42607 0.66 0.766199
Target:  5'- -aGGCaGCUCGCGCG-GCgcaaaguccaGCGGGGaCUc -3'
miRNA:   3'- caUUGaCGAGCGCGUaCG----------CGCCCC-GA- -5'
23667 3' -58.7 NC_005261.1 + 44258 0.69 0.575111
Target:  5'- -cGACgccGCggCGCGCGgggGgGCGGGGCc -3'
miRNA:   3'- caUUGa--CGa-GCGCGUa--CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 46484 0.66 0.747038
Target:  5'- --uGCaGCUCgGCGCccucCGCGGGGCg -3'
miRNA:   3'- cauUGaCGAG-CGCGuac-GCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 46900 0.69 0.544923
Target:  5'- -cAGCcagGCcCGCGCAcGCacGCGGGGCUg -3'
miRNA:   3'- caUUGa--CGaGCGCGUaCG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 50103 0.67 0.667087
Target:  5'- --cGCUGCcCGCGCc-GCGCaGGGCc -3'
miRNA:   3'- cauUGACGaGCGCGuaCGCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 50915 0.69 0.575111
Target:  5'- cGgcGCcGcCUCGC-CggGCGCGGGGCUc -3'
miRNA:   3'- -CauUGaC-GAGCGcGuaCGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 54145 0.68 0.595449
Target:  5'- --cGCcGCaCGCGgcCGUGCGCGGGGUUg -3'
miRNA:   3'- cauUGaCGaGCGC--GUACGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 55029 0.77 0.206299
Target:  5'- cGUAGCcgccgGCccCGCGCAgcUGCGCGGGGCc -3'
miRNA:   3'- -CAUUGa----CGa-GCGCGU--ACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 56115 0.66 0.747038
Target:  5'- -gAGCgGCgggagCGCGCcgcaggGCGgGGGGCg -3'
miRNA:   3'- caUUGaCGa----GCGCGua----CGCgCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 57668 0.68 0.595449
Target:  5'- -aGACUGCgcgaGCGCcaGCcgGCGGGGCa -3'
miRNA:   3'- caUUGACGag--CGCGuaCG--CGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 62689 0.67 0.697527
Target:  5'- -cAGCUGCaCGCGCcgGCGCaGcGuGGCg -3'
miRNA:   3'- caUUGACGaGCGCGuaCGCG-C-C-CCGa -5'
23667 3' -58.7 NC_005261.1 + 62885 0.67 0.697527
Target:  5'- cGgcGCaGCcCGCGCGaggcgGgGCGGGGCg -3'
miRNA:   3'- -CauUGaCGaGCGCGUa----CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 63009 0.69 0.575111
Target:  5'- -cGGCgGC-CGCGCccGCGCGGGcGCc -3'
miRNA:   3'- caUUGaCGaGCGCGuaCGCGCCC-CGa -5'
23667 3' -58.7 NC_005261.1 + 63730 0.66 0.71756
Target:  5'- -gAGCgGCgUGCGCAUGgcCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGUAC--GCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 66607 0.7 0.505525
Target:  5'- -gAGCUGCUggauggCGCGCGUGCGCauGGCc -3'
miRNA:   3'- caUUGACGA------GCGCGUACGCGccCCGa -5'
23667 3' -58.7 NC_005261.1 + 67113 0.67 0.707576
Target:  5'- -gGGCgGCgCGCGCA-GUGCGGcGGCc -3'
miRNA:   3'- caUUGaCGaGCGCGUaCGCGCC-CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.