miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 67 0.67 0.667087
Target:  5'- -aAAUcgGCgCGCGCGggggcgggGUGCGGGGCg -3'
miRNA:   3'- caUUGa-CGaGCGCGUa-------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 1271 0.69 0.564999
Target:  5'- gGUGACUGUgccgGCGCccagGCcgGCGGGGCUc -3'
miRNA:   3'- -CAUUGACGag--CGCGua--CG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 3812 0.68 0.60464
Target:  5'- -cAGCcGCUCGCGCGcUGcCGCGGGcccgggcGCUg -3'
miRNA:   3'- caUUGaCGAGCGCGU-AC-GCGCCC-------CGA- -5'
23667 3' -58.7 NC_005261.1 + 4494 0.69 0.579167
Target:  5'- cGUAGcCUGCgcgggccccagucgCGCGCccGCGCGGGcGCc -3'
miRNA:   3'- -CAUU-GACGa-------------GCGCGuaCGCGCCC-CGa -5'
23667 3' -58.7 NC_005261.1 + 11464 0.67 0.707576
Target:  5'- -aAGCggaGCggGCGCGgagGgGCGGGGCg -3'
miRNA:   3'- caUUGa--CGagCGCGUa--CgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 13678 0.73 0.362972
Target:  5'- -gGGC-GCggggCGCGCggGCGUGGGGCg -3'
miRNA:   3'- caUUGaCGa---GCGCGuaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 14443 0.67 0.687424
Target:  5'- -cGGCUcGCUCGCGgG-GCGCGcGGCg -3'
miRNA:   3'- caUUGA-CGAGCGCgUaCGCGCcCCGa -5'
23667 3' -58.7 NC_005261.1 + 15492 0.66 0.766199
Target:  5'- --cGCcGCUCGCuGCGg--GCGGGGCg -3'
miRNA:   3'- cauUGaCGAGCG-CGUacgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 20557 0.66 0.747038
Target:  5'- cGUGGCggcggGCU-GCGCAgcgGCGCcGGcGGCg -3'
miRNA:   3'- -CAUUGa----CGAgCGCGUa--CGCG-CC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 20833 0.66 0.756674
Target:  5'- -gAACUGCgcguUCGCGgGggcaGCGUGGcGGCUc -3'
miRNA:   3'- caUUGACG----AGCGCgUa---CGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 21824 0.72 0.413156
Target:  5'- --cGCgGCgggCGCGCGUGCGgGcGGGCUc -3'
miRNA:   3'- cauUGaCGa--GCGCGUACGCgC-CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 21861 0.68 0.618968
Target:  5'- cUGAC-GCUCGCGCucgcgaacgcgcgccCGCGGGGCc -3'
miRNA:   3'- cAUUGaCGAGCGCGuac------------GCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 28622 0.67 0.707576
Target:  5'- -gAGCUGUg-GCGCAUGguggcCGCGGGGg- -3'
miRNA:   3'- caUUGACGagCGCGUAC-----GCGCCCCga -5'
23667 3' -58.7 NC_005261.1 + 30236 0.66 0.750905
Target:  5'- cGUGGCcccGCUgGCGCGguacucgacgcgcgGCGCGGcGGCc -3'
miRNA:   3'- -CAUUGa--CGAgCGCGUa-------------CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 31510 0.66 0.737301
Target:  5'- ---cCUGCUCGCG---GCGCuGGGCa -3'
miRNA:   3'- cauuGACGAGCGCguaCGCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 32058 0.69 0.575111
Target:  5'- -gGACaugGC-CGCGCAgagcgcgGCGCuGGGGCUc -3'
miRNA:   3'- caUUGa--CGaGCGCGUa------CGCG-CCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 32372 0.67 0.667087
Target:  5'- -aGAC-GCUgGUGCAggcgcgGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGAgCGCGUa-----CGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 33736 0.7 0.534971
Target:  5'- ---cCUGCcccUCGCGCG-GCGcCGGGGCc -3'
miRNA:   3'- cauuGACG---AGCGCGUaCGC-GCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 36149 1.07 0.001761
Target:  5'- aGUAACUGCUCGCGCAUGCGCGGGGCUu -3'
miRNA:   3'- -CAUUGACGAGCGCGUACGCGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 37001 0.67 0.677274
Target:  5'- -----aGCcCGCGgGcUGCGCGGGGCc -3'
miRNA:   3'- cauugaCGaGCGCgU-ACGCGCCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.