miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 3' -58.7 NC_005261.1 + 15492 0.66 0.766199
Target:  5'- --cGCcGCUCGCuGCGg--GCGGGGCg -3'
miRNA:   3'- cauUGaCGAGCG-CGUacgCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 92600 0.71 0.43081
Target:  5'- -cAGCcGCUCgcgGCGCGUGC-CGGGGCc -3'
miRNA:   3'- caUUGaCGAG---CGCGUACGcGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 69278 0.71 0.439801
Target:  5'- -gAGCcGCcCGCGCcgaccccgGCGCGGGGCg -3'
miRNA:   3'- caUUGaCGaGCGCGua------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 68258 0.71 0.458099
Target:  5'- -gGACUGCcuggCGCGCcUGCGCccgcgcggcGGGGCc -3'
miRNA:   3'- caUUGACGa---GCGCGuACGCG---------CCCCGa -5'
23667 3' -58.7 NC_005261.1 + 123163 0.71 0.467399
Target:  5'- -gGGCgggGCgggCGCGCggGCGUGGuGGCUg -3'
miRNA:   3'- caUUGa--CGa--GCGCGuaCGCGCC-CCGA- -5'
23667 3' -58.7 NC_005261.1 + 95797 0.71 0.476795
Target:  5'- --cGCUGCUagccgGCGCcgGCG-GGGGCUc -3'
miRNA:   3'- cauUGACGAg----CGCGuaCGCgCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 100725 0.7 0.495862
Target:  5'- -cGGCcGCgccgCGCGCGcGCGCGGcGGCg -3'
miRNA:   3'- caUUGaCGa---GCGCGUaCGCGCC-CCGa -5'
23667 3' -58.7 NC_005261.1 + 134425 0.7 0.505525
Target:  5'- --uGCUGCUCcaCGC-UGCucGCGGGGCUg -3'
miRNA:   3'- cauUGACGAGc-GCGuACG--CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 66607 0.7 0.505525
Target:  5'- -gAGCUGCUggauggCGCGCGUGCGCauGGCc -3'
miRNA:   3'- caUUGACGA------GCGCGUACGCGccCCGa -5'
23667 3' -58.7 NC_005261.1 + 21824 0.72 0.413156
Target:  5'- --cGCgGCgggCGCGCGUGCGgGcGGGCUc -3'
miRNA:   3'- cauUGaCGa--GCGCGUACGCgC-CCCGA- -5'
23667 3' -58.7 NC_005261.1 + 120952 0.72 0.38753
Target:  5'- gGUGGagGCUCGCGCcc-CGCGGGGCg -3'
miRNA:   3'- -CAUUgaCGAGCGCGuacGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 118142 0.72 0.375934
Target:  5'- -cGGCcgGCUCGCGCAgacgcuggccgucGCgGCGGGGCUu -3'
miRNA:   3'- caUUGa-CGAGCGCGUa------------CG-CGCCCCGA- -5'
23667 3' -58.7 NC_005261.1 + 118206 0.79 0.1448
Target:  5'- ---cCUGC-CGCGC-UGCGCGGGGCg -3'
miRNA:   3'- cauuGACGaGCGCGuACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 55029 0.77 0.206299
Target:  5'- cGUAGCcgccgGCccCGCGCAgcUGCGCGGGGCc -3'
miRNA:   3'- -CAUUGa----CGa-GCGCGU--ACGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 71939 0.77 0.208351
Target:  5'- -aGGCUGC-CGCGCGccccacuggcgucgGCGCGGGGCg -3'
miRNA:   3'- caUUGACGaGCGCGUa-------------CGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 133317 0.75 0.285108
Target:  5'- cUGGCUGCUCGCGCAgcuccugccggcacGCGCGcGcGGCg -3'
miRNA:   3'- cAUUGACGAGCGCGUa-------------CGCGC-C-CCGa -5'
23667 3' -58.7 NC_005261.1 + 112908 0.74 0.317176
Target:  5'- ---cCUGCcgCGCuGCGUGCGCGaGGGCg -3'
miRNA:   3'- cauuGACGa-GCG-CGUACGCGC-CCCGa -5'
23667 3' -58.7 NC_005261.1 + 129979 0.73 0.34721
Target:  5'- -cAAgUG-UCGCGCAUGCGCuGGGCg -3'
miRNA:   3'- caUUgACgAGCGCGUACGCGcCCCGa -5'
23667 3' -58.7 NC_005261.1 + 13678 0.73 0.362972
Target:  5'- -gGGC-GCggggCGCGCggGCGUGGGGCg -3'
miRNA:   3'- caUUGaCGa---GCGCGuaCGCGCCCCGa -5'
23667 3' -58.7 NC_005261.1 + 41890 0.73 0.371037
Target:  5'- -cGGCguaCUCGCGCA-GCGUGGGGUUg -3'
miRNA:   3'- caUUGac-GAGCGCGUaCGCGCCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.