Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23667 | 3' | -58.7 | NC_005261.1 | + | 120646 | 0.7 | 0.505525 |
Target: 5'- uGUGcCUGCg-GCGCAagGCGCGGGcGCg -3' miRNA: 3'- -CAUuGACGagCGCGUa-CGCGCCC-CGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 66607 | 0.7 | 0.505525 |
Target: 5'- -gAGCUGCUggauggCGCGCGUGCGCauGGCc -3' miRNA: 3'- caUUGACGA------GCGCGUACGCGccCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 41890 | 0.73 | 0.371037 |
Target: 5'- -cGGCguaCUCGCGCA-GCGUGGGGUUg -3' miRNA: 3'- caUUGac-GAGCGCGUaCGCGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 13678 | 0.73 | 0.362972 |
Target: 5'- -gGGC-GCggggCGCGCggGCGUGGGGCg -3' miRNA: 3'- caUUGaCGa---GCGCGuaCGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 129979 | 0.73 | 0.34721 |
Target: 5'- -cAAgUG-UCGCGCAUGCGCuGGGCg -3' miRNA: 3'- caUUgACgAGCGCGUACGCGcCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 112908 | 0.74 | 0.317176 |
Target: 5'- ---cCUGCcgCGCuGCGUGCGCGaGGGCg -3' miRNA: 3'- cauuGACGa-GCG-CGUACGCGC-CCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 133317 | 0.75 | 0.285108 |
Target: 5'- cUGGCUGCUCGCGCAgcuccugccggcacGCGCGcGcGGCg -3' miRNA: 3'- cAUUGACGAGCGCGUa-------------CGCGC-C-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 71939 | 0.77 | 0.208351 |
Target: 5'- -aGGCUGC-CGCGCGccccacuggcgucgGCGCGGGGCg -3' miRNA: 3'- caUUGACGaGCGCGUa-------------CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 55029 | 0.77 | 0.206299 |
Target: 5'- cGUAGCcgccgGCccCGCGCAgcUGCGCGGGGCc -3' miRNA: 3'- -CAUUGa----CGa-GCGCGU--ACGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 118206 | 0.79 | 0.1448 |
Target: 5'- ---cCUGC-CGCGC-UGCGCGGGGCg -3' miRNA: 3'- cauuGACGaGCGCGuACGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 118142 | 0.72 | 0.375934 |
Target: 5'- -cGGCcgGCUCGCGCAgacgcuggccgucGCgGCGGGGCUu -3' miRNA: 3'- caUUGa-CGAGCGCGUa------------CG-CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 120952 | 0.72 | 0.38753 |
Target: 5'- gGUGGagGCUCGCGCcc-CGCGGGGCg -3' miRNA: 3'- -CAUUgaCGAGCGCGuacGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 134425 | 0.7 | 0.505525 |
Target: 5'- --uGCUGCUCcaCGC-UGCucGCGGGGCUg -3' miRNA: 3'- cauUGACGAGc-GCGuACG--CGCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 100725 | 0.7 | 0.495862 |
Target: 5'- -cGGCcGCgccgCGCGCGcGCGCGGcGGCg -3' miRNA: 3'- caUUGaCGa---GCGCGUaCGCGCC-CCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 95797 | 0.71 | 0.476795 |
Target: 5'- --cGCUGCUagccgGCGCcgGCG-GGGGCUc -3' miRNA: 3'- cauUGACGAg----CGCGuaCGCgCCCCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 123163 | 0.71 | 0.467399 |
Target: 5'- -gGGCgggGCgggCGCGCggGCGUGGuGGCUg -3' miRNA: 3'- caUUGa--CGa--GCGCGuaCGCGCC-CCGA- -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 68258 | 0.71 | 0.458099 |
Target: 5'- -gGACUGCcuggCGCGCcUGCGCccgcgcggcGGGGCc -3' miRNA: 3'- caUUGACGa---GCGCGuACGCG---------CCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 69278 | 0.71 | 0.439801 |
Target: 5'- -gAGCcGCcCGCGCcgaccccgGCGCGGGGCg -3' miRNA: 3'- caUUGaCGaGCGCGua------CGCGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 92600 | 0.71 | 0.43081 |
Target: 5'- -cAGCcGCUCgcgGCGCGUGC-CGGGGCc -3' miRNA: 3'- caUUGaCGAG---CGCGUACGcGCCCCGa -5' |
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23667 | 3' | -58.7 | NC_005261.1 | + | 21824 | 0.72 | 0.413156 |
Target: 5'- --cGCgGCgggCGCGCGUGCGgGcGGGCUc -3' miRNA: 3'- cauUGaCGa--GCGCGUACGCgC-CCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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