miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 17474 0.68 0.999375
Target:  5'- gGCAGaCGCggGCGCGCcgGGggguccuAGACg -3'
miRNA:   3'- -CGUC-GCGuaCGCGCGaaUUauu----UUUG- -5'
23667 5' -45.3 NC_005261.1 + 20283 0.67 0.999893
Target:  5'- cGUGuCGCGgggGCGCGCUUGcggcagAAAAACg -3'
miRNA:   3'- -CGUcGCGUa--CGCGCGAAUua----UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 20575 0.69 0.998215
Target:  5'- aGCGGCGCcgGCgGCGCgg-GUGGccuACg -3'
miRNA:   3'- -CGUCGCGuaCG-CGCGaauUAUUuu-UG- -5'
23667 5' -45.3 NC_005261.1 + 20982 0.66 0.999981
Target:  5'- cGCGGCGCccuacccccuuagacGCGCGCcu--UGGGGGCg -3'
miRNA:   3'- -CGUCGCGua-------------CGCGCGaauuAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 23212 0.67 0.99992
Target:  5'- cGCAGCgGCGgccGCGCGC-----AAAAGCc -3'
miRNA:   3'- -CGUCG-CGUa--CGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 23343 0.77 0.906619
Target:  5'- cGCGGCGCA-GCGCGCgc-GUGucGGCc -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauUAUuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 26054 0.67 0.999893
Target:  5'- gGCGGcCGCG-GC-CGCUUGAagcgAAAAGCa -3'
miRNA:   3'- -CGUC-GCGUaCGcGCGAAUUa---UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 28783 0.67 0.999881
Target:  5'- cGCGGCGCggGCGCucGCggccgcggcGGAGGCa -3'
miRNA:   3'- -CGUCGCGuaCGCG--CGaauua----UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 29198 0.68 0.999608
Target:  5'- cGCGGCGCccgcgcggGCGCGCgacu--GGGGCc -3'
miRNA:   3'- -CGUCGCGua------CGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 29582 0.71 0.993936
Target:  5'- aGCGGCGCGUGCaGgGCUgcc--GGGGCc -3'
miRNA:   3'- -CGUCGCGUACG-CgCGAauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 29868 0.72 0.985317
Target:  5'- cGCGGCGCcgGCGcCGCUgccgcc-AGCg -3'
miRNA:   3'- -CGUCGCGuaCGC-GCGAauuauuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 29907 0.66 0.999972
Target:  5'- gGCAGCGCGcgagcggcUGCGCGagcuggc-GGACg -3'
miRNA:   3'- -CGUCGCGU--------ACGCGCgaauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 29972 0.66 0.999983
Target:  5'- gGCGGCGCG-GUGCGCc---------- -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 30176 0.67 0.999855
Target:  5'- cGCcGCGC-UGCGCGCcgAGgcggccgccgcgcUGGAGGCg -3'
miRNA:   3'- -CGuCGCGuACGCGCGaaUU-------------AUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 30264 0.69 0.998144
Target:  5'- cGCGGCGCGgcggcccGCGCGCccgccu-GGACg -3'
miRNA:   3'- -CGUCGCGUa------CGCGCGaauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 31684 0.68 0.999608
Target:  5'- cGCGGCGCGgcgGCG-GCUgaucGUGAucGACg -3'
miRNA:   3'- -CGUCGCGUa--CGCgCGAau--UAUUu-UUG- -5'
23667 5' -45.3 NC_005261.1 + 31795 0.78 0.860884
Target:  5'- cGCGGCGCAgugcgccGCGCGCUggccu-GAGCg -3'
miRNA:   3'- -CGUCGCGUa------CGCGCGAauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 31825 0.66 0.999983
Target:  5'- nCGGCGCGcgcugGCGCGCgccGUGcuGGCc -3'
miRNA:   3'- cGUCGCGUa----CGCGCGaauUAUuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 31945 0.66 0.999977
Target:  5'- cGCGGCGCcaacGUGCGCUa--------- -3'
miRNA:   3'- -CGUCGCGua--CGCGCGAauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 32024 0.69 0.998899
Target:  5'- gGCAGCGCGUGCuGcCGCggcucgacGGGCg -3'
miRNA:   3'- -CGUCGCGUACG-C-GCGaauuauu-UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.