miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 1475 0.67 0.999816
Target:  5'- aGCAGCGCGgcCGCGCa----GAAGGCc -3'
miRNA:   3'- -CGUCGCGUacGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 1834 0.67 0.999816
Target:  5'- aGCGGCcUcgGCGCGCgc---GAAGGCg -3'
miRNA:   3'- -CGUCGcGuaCGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 1924 0.68 0.999608
Target:  5'- cGCGGCGCAcUGCGcCGCg---------- -3'
miRNA:   3'- -CGUCGCGU-ACGC-GCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 2383 0.67 0.999816
Target:  5'- cGCAGCG---GCGCGCUggcggcGAGCg -3'
miRNA:   3'- -CGUCGCguaCGCGCGAauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 2553 0.67 0.99992
Target:  5'- cGCGGCGC-UGgGCGCgggcgugUGGUAc---- -3'
miRNA:   3'- -CGUCGCGuACgCGCGa------AUUAUuuuug -5'
23667 5' -45.3 NC_005261.1 + 3347 0.69 0.99903
Target:  5'- cGCGGCGCccgGCGCGCc---------- -3'
miRNA:   3'- -CGUCGCGua-CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 3549 0.73 0.983734
Target:  5'- cGCAGCGCGgcggGCGCgGCgccgcuAAGGCg -3'
miRNA:   3'- -CGUCGCGUa---CGCG-CGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 3852 0.71 0.99491
Target:  5'- aGCGGCGCcgGCGcCGCgcggccggcGAGCa -3'
miRNA:   3'- -CGUCGCGuaCGC-GCGaauuauu--UUUG- -5'
23667 5' -45.3 NC_005261.1 + 4403 0.66 0.999968
Target:  5'- gGCGGCgGCG-GCGCGCUg--------- -3'
miRNA:   3'- -CGUCG-CGUaCGCGCGAauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 5823 0.68 0.999503
Target:  5'- aGCGGCgGCcgAUGCGCGCcgGGUuacGGCg -3'
miRNA:   3'- -CGUCG-CG--UACGCGCGaaUUAuuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 7201 0.69 0.999219
Target:  5'- gGguGCGCGUGCGUgGCagcGGUGAGuAGCu -3'
miRNA:   3'- -CguCGCGUACGCG-CGaa-UUAUUU-UUG- -5'
23667 5' -45.3 NC_005261.1 + 12313 0.67 0.999893
Target:  5'- -gGGCGCGUagccggcgggcGCGCGCUUGGc------ -3'
miRNA:   3'- cgUCGCGUA-----------CGCGCGAAUUauuuuug -5'
23667 5' -45.3 NC_005261.1 + 12358 0.66 0.999977
Target:  5'- cGCGGCgGCAaccgGCGCGuCUUcGAUGGuGAGCu -3'
miRNA:   3'- -CGUCG-CGUa---CGCGC-GAA-UUAUU-UUUG- -5'
23667 5' -45.3 NC_005261.1 + 13123 0.66 0.999956
Target:  5'- gGCGGcCGCGggGCGCGUguggucGGUGAcgGCg -3'
miRNA:   3'- -CGUC-GCGUa-CGCGCGaa----UUAUUuuUG- -5'
23667 5' -45.3 NC_005261.1 + 13678 0.69 0.998215
Target:  5'- -gGGCGCGggGCGCGCgggcguGGGGCg -3'
miRNA:   3'- cgUCGCGUa-CGCGCGaauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 14214 0.73 0.981579
Target:  5'- -gGGCGCAccaacGCGCGCg--GUGAAGACc -3'
miRNA:   3'- cgUCGCGUa----CGCGCGaauUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 14858 0.69 0.99903
Target:  5'- gGCGGCGCAU-CGCGCa---------- -3'
miRNA:   3'- -CGUCGCGUAcGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 15275 0.66 0.999956
Target:  5'- gGCGGCGCcgccgggGCGCGCg---------- -3'
miRNA:   3'- -CGUCGCGua-----CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 15693 0.7 0.996293
Target:  5'- cGCAGCGCGagcguUGCGUcgGCUgGGUGGAcGGCg -3'
miRNA:   3'- -CGUCGCGU-----ACGCG--CGAaUUAUUU-UUG- -5'
23667 5' -45.3 NC_005261.1 + 15840 0.69 0.99903
Target:  5'- cGCAuCGCGaGCGCGCUa---GAGGACg -3'
miRNA:   3'- -CGUcGCGUaCGCGCGAauuaUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.