miRNA display CGI


Results 1 - 20 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 36187 1.14 0.013605
Target:  5'- gGCAGCGCAUGCGCGCUUAAUAAAAACu -3'
miRNA:   3'- -CGUCGCGUACGCGCGAAUUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 50997 0.8 0.776104
Target:  5'- gGCGGCGCGUGgGCGCggc--GGGAGCu -3'
miRNA:   3'- -CGUCGCGUACgCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 53872 0.79 0.806184
Target:  5'- cGCGGCGC--GCGCGCUgucgAGUcGAAGCg -3'
miRNA:   3'- -CGUCGCGuaCGCGCGAa---UUAuUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 31795 0.78 0.860884
Target:  5'- cGCGGCGCAgugcgccGCGCGCUggccu-GAGCg -3'
miRNA:   3'- -CGUCGCGUa------CGCGCGAauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 105592 0.77 0.877207
Target:  5'- cGgGGCGCGUGCGCGCgac----GAACg -3'
miRNA:   3'- -CgUCGCGUACGCGCGaauuauuUUUG- -5'
23667 5' -45.3 NC_005261.1 + 59953 0.77 0.884974
Target:  5'- cGCAGCGCG-GCGCGCgugaacgGGUcgaaGAAGGCg -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaa-----UUA----UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 23343 0.77 0.906619
Target:  5'- cGCGGCGCA-GCGCGCgc-GUGucGGCc -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauUAUuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 76467 0.77 0.906619
Target:  5'- gGCGGCGCcgGCGCGCgcgcgGAccccGAGCc -3'
miRNA:   3'- -CGUCGCGuaCGCGCGaauuaUU----UUUG- -5'
23667 5' -45.3 NC_005261.1 + 73721 0.77 0.906619
Target:  5'- cGCGGUcgGCGUGCGCGCUUGc------- -3'
miRNA:   3'- -CGUCG--CGUACGCGCGAAUuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 122933 0.76 0.911962
Target:  5'- aGCAGCGCGgccGCGCGCUcaaccccAAACa -3'
miRNA:   3'- -CGUCGCGUa--CGCGCGAauuauu-UUUG- -5'
23667 5' -45.3 NC_005261.1 + 136614 0.76 0.913268
Target:  5'- aGCGGCGCGcGCGCGCc----GAGGGCg -3'
miRNA:   3'- -CGUCGCGUaCGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 49259 0.76 0.913918
Target:  5'- gGCGGCGUcgGCGCGCacguccgcgagGAAGGCg -3'
miRNA:   3'- -CGUCGCGuaCGCGCGaauua------UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 116486 0.76 0.93148
Target:  5'- gGCGGgGCggGCGCGCgguAUAAAGAg -3'
miRNA:   3'- -CGUCgCGuaCGCGCGaauUAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 74945 0.76 0.93148
Target:  5'- uGCGGCGCggGCGCGCUc--------- -3'
miRNA:   3'- -CGUCGCGuaCGCGCGAauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 32549 0.75 0.93697
Target:  5'- cGCGGCGCGggccgGCGCGC---GUGGAAGu -3'
miRNA:   3'- -CGUCGCGUa----CGCGCGaauUAUUUUUg -5'
23667 5' -45.3 NC_005261.1 + 74159 0.75 0.94564
Target:  5'- aGCGGgGCAUGCGCGUgcucaagguGACg -3'
miRNA:   3'- -CGUCgCGUACGCGCGaauuauuu-UUG- -5'
23667 5' -45.3 NC_005261.1 + 83498 0.75 0.951714
Target:  5'- -gAGCGCcagGCGCGCgcgccGGUGGAAGCg -3'
miRNA:   3'- cgUCGCGua-CGCGCGaa---UUAUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 81985 0.75 0.956064
Target:  5'- gGCuGCGCgaaguuGUGCGCGCUgccgucgAAGAGCg -3'
miRNA:   3'- -CGuCGCG------UACGCGCGAauua---UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 53113 0.74 0.963206
Target:  5'- cGCGGCGC-UGCGCGCcgccaacAGGGCg -3'
miRNA:   3'- -CGUCGCGuACGCGCGaauuau-UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 95784 0.74 0.966105
Target:  5'- cGCuGCGCcgGCGCGCUgcuagccGGCg -3'
miRNA:   3'- -CGuCGCGuaCGCGCGAauuauuuUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.