miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23667 5' -45.3 NC_005261.1 + 131507 0.66 0.999956
Target:  5'- cCGGCaCGUGCGCGCgcAGUuc-AACg -3'
miRNA:   3'- cGUCGcGUACGCGCGaaUUAuuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 58285 0.66 0.99994
Target:  5'- aCGGgGCcgGCGCGCcg---GGGGGCg -3'
miRNA:   3'- cGUCgCGuaCGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 118574 0.66 0.999964
Target:  5'- cGCGcGCGCGgcgGCGCGCgccgccgccgcGGAGCu -3'
miRNA:   3'- -CGU-CGCGUa--CGCGCGaauuau-----UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 45115 0.66 0.99994
Target:  5'- aGCcGgGCAcggGCGCGCU-GAUGcuGACg -3'
miRNA:   3'- -CGuCgCGUa--CGCGCGAaUUAUuuUUG- -5'
23667 5' -45.3 NC_005261.1 + 47578 0.66 0.999956
Target:  5'- cGCauGGCGCAgagccGCGCGCgcgcgaGGGAGCc -3'
miRNA:   3'- -CG--UCGCGUa----CGCGCGaauua-UUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 15275 0.66 0.999956
Target:  5'- gGCGGCGCcgccgggGCGCGCg---------- -3'
miRNA:   3'- -CGUCGCGua-----CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 130631 0.66 0.99994
Target:  5'- aCAGCGCGcgggGCGCGCg---------- -3'
miRNA:   3'- cGUCGCGUa---CGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 86202 0.66 0.999956
Target:  5'- gGCuccGCGUcgGCGCGCcgAAccGGGGCa -3'
miRNA:   3'- -CGu--CGCGuaCGCGCGaaUUauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 43776 0.66 0.999956
Target:  5'- cGUGGgGCG-GCGCGCg----GAGGGCg -3'
miRNA:   3'- -CGUCgCGUaCGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 38955 0.66 0.999956
Target:  5'- cGCGGCGCGcggGCuGCGCagcAAcAAGAGCc -3'
miRNA:   3'- -CGUCGCGUa--CG-CGCGaa-UUaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 108564 0.66 0.999956
Target:  5'- cGCAcgucguGCGaCGUGCGCGC-----GAAGGCg -3'
miRNA:   3'- -CGU------CGC-GUACGCGCGaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 67670 0.66 0.999956
Target:  5'- cGCGGCGCcagGCGCG----GUGAGcGCg -3'
miRNA:   3'- -CGUCGCGua-CGCGCgaauUAUUUuUG- -5'
23667 5' -45.3 NC_005261.1 + 62301 0.66 0.999956
Target:  5'- cGCcGCGCggGCGCGCg---------- -3'
miRNA:   3'- -CGuCGCGuaCGCGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 92157 0.66 0.99994
Target:  5'- uCGGCGagcGCGCGCUcGGUGGAGc- -3'
miRNA:   3'- cGUCGCguaCGCGCGAaUUAUUUUug -5'
23667 5' -45.3 NC_005261.1 + 55495 0.66 0.99994
Target:  5'- --cGCGCG-GCGCGCUcu---GGAGCa -3'
miRNA:   3'- cguCGCGUaCGCGCGAauuauUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 133351 0.66 0.999983
Target:  5'- cGCGGCGC-UGCcGCGCa---------- -3'
miRNA:   3'- -CGUCGCGuACG-CGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 45623 0.66 0.999953
Target:  5'- cGCGGCGCGgcgcgGCGgGCccgcgccGGAGCa -3'
miRNA:   3'- -CGUCGCGUa----CGCgCGaauuau-UUUUG- -5'
23667 5' -45.3 NC_005261.1 + 57610 0.66 0.999956
Target:  5'- gGCGGCGCAcGCcGCGCa---------- -3'
miRNA:   3'- -CGUCGCGUaCG-CGCGaauuauuuuug -5'
23667 5' -45.3 NC_005261.1 + 93219 0.66 0.99994
Target:  5'- aGCAGCGCcaGCGCGgcaa--AAAAGCg -3'
miRNA:   3'- -CGUCGCGuaCGCGCgaauuaUUUUUG- -5'
23667 5' -45.3 NC_005261.1 + 13123 0.66 0.999956
Target:  5'- gGCGGcCGCGggGCGCGUguggucGGUGAcgGCg -3'
miRNA:   3'- -CGUC-GCGUa-CGCGCGaa----UUAUUuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.