miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 63575 0.66 0.94448
Target:  5'- gGCAugAugGGCccgaagAGCGGCGcGGGgcccugUGGCc -3'
miRNA:   3'- -CGUugUugUCG------UCGUUGC-CCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 122441 0.66 0.94448
Target:  5'- -aAACcACAGCAGcCAGCGGuaGGccgUGGCa -3'
miRNA:   3'- cgUUGuUGUCGUC-GUUGCC--CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 6429 0.66 0.939799
Target:  5'- uGCucGCGAgGGCGGUc-CGGGGgcCGGCc -3'
miRNA:   3'- -CGu-UGUUgUCGUCGuuGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 99750 0.66 0.939799
Target:  5'- cGCcAC-ACGGcCAGCAcgucggACGGGGagaggCGGCc -3'
miRNA:   3'- -CGuUGuUGUC-GUCGU------UGCCCCa----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 67869 0.66 0.939799
Target:  5'- cGCGGCAACucccgGGCGGCGcGGGUaaGCg -3'
miRNA:   3'- -CGUUGUUGucg--UCGUUGC-CCCAgcCG- -5'
23668 3' -53.8 NC_005261.1 + 99351 0.66 0.939799
Target:  5'- aGCAGCAGCGcGCAcGUGACGaGGUCcaGCg -3'
miRNA:   3'- -CGUUGUUGU-CGU-CGUUGCcCCAGc-CG- -5'
23668 3' -53.8 NC_005261.1 + 23538 0.66 0.939317
Target:  5'- aGCGGCAGaGGCGGCAGgagccgucgcaggUGGGGcagGGCu -3'
miRNA:   3'- -CGUUGUUgUCGUCGUU-------------GCCCCag-CCG- -5'
23668 3' -53.8 NC_005261.1 + 127794 0.66 0.939317
Target:  5'- aGCGGCGggccggcGCcGCGGCGGCGGGccgcUCGcGCu -3'
miRNA:   3'- -CGUUGU-------UGuCGUCGUUGCCCc---AGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 76155 0.66 0.938346
Target:  5'- gGCGGCGcacgacgccguggcGCuGCAGUAcgaGCGGGGccUgGGCg -3'
miRNA:   3'- -CGUUGU--------------UGuCGUCGU---UGCCCC--AgCCG- -5'
23668 3' -53.8 NC_005261.1 + 82573 0.67 0.93487
Target:  5'- cGCAGCAGCucgcGCAGCGcguccucguuGCGcuGGUCcgGGCg -3'
miRNA:   3'- -CGUUGUUGu---CGUCGU----------UGCc-CCAG--CCG- -5'
23668 3' -53.8 NC_005261.1 + 130623 0.67 0.93487
Target:  5'- cGCcuuCAACAGC-GC-GCGGGG-CGcGCg -3'
miRNA:   3'- -CGuu-GUUGUCGuCGuUGCCCCaGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 14895 0.67 0.93487
Target:  5'- cGCgAGCAGCAGCAGCAccagcacgcACaGGGGcaccaGGa -3'
miRNA:   3'- -CG-UUGUUGUCGUCGU---------UG-CCCCag---CCg -5'
23668 3' -53.8 NC_005261.1 + 20181 0.67 0.93487
Target:  5'- cGCcGCAagGCAGCAGgcgaAGCGGGGccgccaaaGGCc -3'
miRNA:   3'- -CGuUGU--UGUCGUCg---UUGCCCCag------CCG- -5'
23668 3' -53.8 NC_005261.1 + 17908 0.67 0.934363
Target:  5'- gGCGACGGCgccgauuAGCAGCGAguCGGGcccgcUGGCg -3'
miRNA:   3'- -CGUUGUUG-------UCGUCGUU--GCCCca---GCCG- -5'
23668 3' -53.8 NC_005261.1 + 96703 0.67 0.931793
Target:  5'- gGCGACc-CAGCAGCGaguugGCGGGcaccacccgggcgCGGCg -3'
miRNA:   3'- -CGUUGuuGUCGUCGU-----UGCCCca-----------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 97993 0.67 0.929692
Target:  5'- aGUGAaGugGGaGGCGGCGGGGgcgcuggCGGCg -3'
miRNA:   3'- -CGUUgUugUCgUCGUUGCCCCa------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 14843 0.67 0.929692
Target:  5'- aGC-ACGGCAGCAgGCGGCGGcGcaUCGcGCa -3'
miRNA:   3'- -CGuUGUUGUCGU-CGUUGCCcC--AGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 65785 0.67 0.929692
Target:  5'- cCGACcGCGGCGGgAACauccgcGGGUCGGg -3'
miRNA:   3'- cGUUGuUGUCGUCgUUGc-----CCCAGCCg -5'
23668 3' -53.8 NC_005261.1 + 118000 0.67 0.926466
Target:  5'- -uGACGGCGGCGGCgcuggAcgcugucggacgcacGCGGGGccCGGCc -3'
miRNA:   3'- cgUUGUUGUCGUCG-----U---------------UGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 11928 0.67 0.924266
Target:  5'- gGCGGCuGCGGCGGCccgcgccGCGGcGGcucgccCGGCg -3'
miRNA:   3'- -CGUUGuUGUCGUCGu------UGCC-CCa-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.