miRNA display CGI


Results 21 - 40 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 15474 0.66 0.952704
Target:  5'- uCGACcGCGGCGGaCAcgcgccgcucgcuGCGGGcggggcguguGUCGGCg -3'
miRNA:   3'- cGUUGuUGUCGUC-GU-------------UGCCC----------CAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 85236 0.66 0.95188
Target:  5'- cGCGcCGGCAucugguugcgcuGCAGCAGCguccagaaccacugGGGGUUaGGCg -3'
miRNA:   3'- -CGUuGUUGU------------CGUCGUUG--------------CCCCAG-CCG- -5'
23668 3' -53.8 NC_005261.1 + 126806 0.66 0.950625
Target:  5'- -gAGCAGC-GCGGCGucugcguacaggucuGCGuuGGUCGGCa -3'
miRNA:   3'- cgUUGUUGuCGUCGU---------------UGCc-CCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 77903 0.66 0.948918
Target:  5'- cGCuGCAGCAGgaggugagcCAGCuGCGGGc-CGGCu -3'
miRNA:   3'- -CGuUGUUGUC---------GUCGuUGCCCcaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 90381 0.66 0.948918
Target:  5'- cGCGGCGA-GGCcccGcCGGCGGGGcUGGCg -3'
miRNA:   3'- -CGUUGUUgUCGu--C-GUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 22536 0.66 0.948918
Target:  5'- cGCGACGgagggccgggGCcGCGGCGagauACGGGGagGGg -3'
miRNA:   3'- -CGUUGU----------UGuCGUCGU----UGCCCCagCCg -5'
23668 3' -53.8 NC_005261.1 + 24385 0.66 0.948918
Target:  5'- -gGugGGCucGuCGGCGGCGGGG-CGGUc -3'
miRNA:   3'- cgUugUUGu-C-GUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 129346 0.66 0.948918
Target:  5'- --cGCcGCGGUAGCGcccccuuccgcGCGcGGGUCGcGCg -3'
miRNA:   3'- cguUGuUGUCGUCGU-----------UGC-CCCAGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 63003 0.66 0.948918
Target:  5'- gGCccuCGGCGGCcGCGcccgcGCGGGcGcCGGCg -3'
miRNA:   3'- -CGuu-GUUGUCGuCGU-----UGCCC-CaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 17178 0.66 0.948918
Target:  5'- gGCGugGGCAGCccuGCcGCGGcGG-CGaGCa -3'
miRNA:   3'- -CGUugUUGUCGu--CGuUGCC-CCaGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 80061 0.66 0.948918
Target:  5'- gGCGGCGggcGCgGGgGGCGugGGGGacgcggacCGGCg -3'
miRNA:   3'- -CGUUGU---UG-UCgUCGUugCCCCa-------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 26269 0.66 0.948918
Target:  5'- nCAACAAUGGCGGagAAUGGGGaUGGg -3'
miRNA:   3'- cGUUGUUGUCGUCg-UUGCCCCaGCCg -5'
23668 3' -53.8 NC_005261.1 + 96435 0.66 0.948918
Target:  5'- uGCGuuGCGAC-GUuuauugAGCGGCGGGGUacagaaGGCc -3'
miRNA:   3'- -CGU--UGUUGuCG------UCGUUGCCCCAg-----CCG- -5'
23668 3' -53.8 NC_005261.1 + 2359 0.66 0.946285
Target:  5'- uGCGACAuccaggccacgcgccGCcGCAGCGGCGcgcuGG-CGGCg -3'
miRNA:   3'- -CGUUGU---------------UGuCGUCGUUGCc---CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 112401 0.66 0.94448
Target:  5'- aCAGCGACAGCgAGCGcccgACGGGcaUCuGCg -3'
miRNA:   3'- cGUUGUUGUCG-UCGU----UGCCCc-AGcCG- -5'
23668 3' -53.8 NC_005261.1 + 68591 0.66 0.94448
Target:  5'- gGCG--GGCcGCGGgAGCGGGGccgaCGGCg -3'
miRNA:   3'- -CGUugUUGuCGUCgUUGCCCCa---GCCG- -5'
23668 3' -53.8 NC_005261.1 + 106090 0.66 0.94448
Target:  5'- --cACAGCGGCGaucGCGACGucGGcCGGCg -3'
miRNA:   3'- cguUGUUGUCGU---CGUUGCc-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 70 0.66 0.94448
Target:  5'- uCGGC-GCGcGCGGgGGCGGGGUgCGGg -3'
miRNA:   3'- cGUUGuUGU-CGUCgUUGCCCCA-GCCg -5'
23668 3' -53.8 NC_005261.1 + 63575 0.66 0.94448
Target:  5'- gGCAugAugGGCccgaagAGCGGCGcGGGgcccugUGGCc -3'
miRNA:   3'- -CGUugUugUCG------UCGUUGC-CCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 122441 0.66 0.94448
Target:  5'- -aAACcACAGCAGcCAGCGGuaGGccgUGGCa -3'
miRNA:   3'- cgUUGuUGUCGUC-GUUGCC--CCa--GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.