miRNA display CGI


Results 21 - 40 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 4448 0.74 0.573583
Target:  5'- aGCAGCGGgcccucCAGCGGCGGCGGcccGUCGcGCg -3'
miRNA:   3'- -CGUUGUU------GUCGUCGUUGCCc--CAGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 5431 0.73 0.646485
Target:  5'- -aGACGACcGCGGCcGCGGcGG-CGGCa -3'
miRNA:   3'- cgUUGUUGuCGUCGuUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 5512 0.79 0.342298
Target:  5'- cGCGGCAGCGGCGGCGAggccgcCGGcuUCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUU------GCCccAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 5818 0.73 0.667332
Target:  5'- uCGGCAGCGGCGGCcgauGCGcgccGGGUuaCGGCg -3'
miRNA:   3'- cGUUGUUGUCGUCGu---UGC----CCCA--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 6081 0.79 0.35019
Target:  5'- aCGGCGGCGGCaAGCAACGGuGG-CGGUg -3'
miRNA:   3'- cGUUGUUGUCG-UCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 6429 0.66 0.939799
Target:  5'- uGCucGCGAgGGCGGUc-CGGGGgcCGGCc -3'
miRNA:   3'- -CGu-UGUUgUCGUCGuuGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 9625 0.66 0.953113
Target:  5'- gGCAgGCGGgGGUGGgGGCuGGGUgGGCg -3'
miRNA:   3'- -CGU-UGUUgUCGUCgUUGcCCCAgCCG- -5'
23668 3' -53.8 NC_005261.1 + 10903 0.71 0.728859
Target:  5'- gGCGGCGGCGGCAGCGcCGccGcCGGCc -3'
miRNA:   3'- -CGUUGUUGUCGUCGUuGCccCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 11928 0.67 0.924266
Target:  5'- gGCGGCuGCGGCGGCccgcgccGCGGcGGcucgccCGGCg -3'
miRNA:   3'- -CGUUGuUGUCGUCGu------UGCC-CCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 12071 0.81 0.251464
Target:  5'- uGCGGCAGCGGCGuccGCGcCGGGG-CGGCu -3'
miRNA:   3'- -CGUUGUUGUCGU---CGUuGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 12423 0.68 0.900079
Target:  5'- cCAGgGGCGGCGGagggcuuGCGGcGUCGGCc -3'
miRNA:   3'- cGUUgUUGUCGUCgu-----UGCCcCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 12758 0.76 0.454555
Target:  5'- gGCGAggucguaGGCGGCGGUGGCGGGGggcucgUCGGCg -3'
miRNA:   3'- -CGUUg------UUGUCGUCGUUGCCCC------AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 13083 0.71 0.777822
Target:  5'- cCGGCccguCGGCgGGCGGCGGGcUCGGCu -3'
miRNA:   3'- cGUUGuu--GUCG-UCGUUGCCCcAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 13116 0.71 0.758577
Target:  5'- -gGGCGuCGGCGGCcGCGGGGcgcguguggUCGGUg -3'
miRNA:   3'- cgUUGUuGUCGUCGuUGCCCC---------AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 13343 0.69 0.831999
Target:  5'- cGCGGC--CAGCGGuCGGCGGaGGcugggCGGCa -3'
miRNA:   3'- -CGUUGuuGUCGUC-GUUGCC-CCa----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 14088 0.7 0.814607
Target:  5'- gGCGaaGCAcucGCGGUcgucgaGGCAGaCGGGcGUCGGCu -3'
miRNA:   3'- -CGU--UGU---UGUCG------UCGUU-GCCC-CAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 14323 0.73 0.625591
Target:  5'- aGCGACGGCGGCAGCAGCag---CGGCn -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGccccaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 14347 0.91 0.060399
Target:  5'- aGCAGCAGCGGCAGCAGCcgcggccGGGG-CGGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUG-------CCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 14674 0.67 0.91625
Target:  5'- cGCGGCGuuuauucuucgcugAUGGUGGCGAgGGGGggcgccuUCGGCc -3'
miRNA:   3'- -CGUUGU--------------UGUCGUCGUUgCCCC-------AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 14731 0.73 0.625591
Target:  5'- aGCGucACGACGGUGGCA--GGGGcgaUCGGCg -3'
miRNA:   3'- -CGU--UGUUGUCGUCGUugCCCC---AGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.