miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 110807 0.66 0.953113
Target:  5'- gGCGAggaGGCGGgGGCgGACGGGGccgCGGa -3'
miRNA:   3'- -CGUUg--UUGUCgUCG-UUGCCCCa--GCCg -5'
23668 3' -53.8 NC_005261.1 + 15474 0.66 0.952704
Target:  5'- uCGACcGCGGCGGaCAcgcgccgcucgcuGCGGGcggggcguguGUCGGCg -3'
miRNA:   3'- cGUUGuUGUCGUC-GU-------------UGCCC----------CAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 77903 0.66 0.948918
Target:  5'- cGCuGCAGCAGgaggugagcCAGCuGCGGGc-CGGCu -3'
miRNA:   3'- -CGuUGUUGUC---------GUCGuUGCCCcaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 68591 0.66 0.94448
Target:  5'- gGCG--GGCcGCGGgAGCGGGGccgaCGGCg -3'
miRNA:   3'- -CGUugUUGuCGUCgUUGCCCCa---GCCG- -5'
23668 3' -53.8 NC_005261.1 + 26269 0.66 0.948918
Target:  5'- nCAACAAUGGCGGagAAUGGGGaUGGg -3'
miRNA:   3'- cGUUGUUGUCGUCg-UUGCCCCaGCCg -5'
23668 3' -53.8 NC_005261.1 + 106090 0.66 0.94448
Target:  5'- --cACAGCGGCGaucGCGACGucGGcCGGCg -3'
miRNA:   3'- cguUGUUGUCGU---CGUUGCc-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 130172 0.66 0.953113
Target:  5'- uCAGCGGCGcCGGCAGCaGGGagcugaCGGCc -3'
miRNA:   3'- cGUUGUUGUcGUCGUUGcCCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 90206 0.66 0.94448
Target:  5'- cGCGGgGGCGGCGgagcgcccucgcGCGGCGGGcgggcgcgccGUCGGg -3'
miRNA:   3'- -CGUUgUUGUCGU------------CGUUGCCC----------CAGCCg -5'
23668 3' -53.8 NC_005261.1 + 41888 0.66 0.953113
Target:  5'- cGCGGCGuacuCGcGCAGCgu-GGGGUUGGg -3'
miRNA:   3'- -CGUUGUu---GU-CGUCGuugCCCCAGCCg -5'
23668 3' -53.8 NC_005261.1 + 24385 0.66 0.948918
Target:  5'- -gGugGGCucGuCGGCGGCGGGG-CGGUc -3'
miRNA:   3'- cgUugUUGu-C-GUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 6429 0.66 0.939799
Target:  5'- uGCucGCGAgGGCGGUc-CGGGGgcCGGCc -3'
miRNA:   3'- -CGu-UGUUgUCGUCGuuGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 17178 0.66 0.948918
Target:  5'- gGCGugGGCAGCccuGCcGCGGcGG-CGaGCa -3'
miRNA:   3'- -CGUugUUGUCGu--CGuUGCC-CCaGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 126806 0.66 0.950625
Target:  5'- -gAGCAGC-GCGGCGucugcguacaggucuGCGuuGGUCGGCa -3'
miRNA:   3'- cgUUGUUGuCGUCGU---------------UGCc-CCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 127794 0.66 0.939317
Target:  5'- aGCGGCGggccggcGCcGCGGCGGCGGGccgcUCGcGCu -3'
miRNA:   3'- -CGUUGU-------UGuCGUCGUUGCCCc---AGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 51698 0.66 0.953113
Target:  5'- cGCGcACGACuacuuccaccAGCuGCGG-GGGGUCGuGCg -3'
miRNA:   3'- -CGU-UGUUG----------UCGuCGUUgCCCCAGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 9625 0.66 0.953113
Target:  5'- gGCAgGCGGgGGUGGgGGCuGGGUgGGCg -3'
miRNA:   3'- -CGU-UGUUgUCGUCgUUGcCCCAgCCG- -5'
23668 3' -53.8 NC_005261.1 + 85236 0.66 0.95188
Target:  5'- cGCGcCGGCAucugguugcgcuGCAGCAGCguccagaaccacugGGGGUUaGGCg -3'
miRNA:   3'- -CGUuGUUGU------------CGUCGUUG--------------CCCCAG-CCG- -5'
23668 3' -53.8 NC_005261.1 + 99750 0.66 0.939799
Target:  5'- cGCcAC-ACGGcCAGCAcgucggACGGGGagaggCGGCc -3'
miRNA:   3'- -CGuUGuUGUC-GUCGU------UGCCCCa----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 63003 0.66 0.948918
Target:  5'- gGCccuCGGCGGCcGCGcccgcGCGGGcGcCGGCg -3'
miRNA:   3'- -CGuu-GUUGUCGuCGU-----UGCCC-CaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 90381 0.66 0.948918
Target:  5'- cGCGGCGA-GGCcccGcCGGCGGGGcUGGCg -3'
miRNA:   3'- -CGUUGUUgUCGu--C-GUUGCCCCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.