miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 77741 0.65 0.959331
Target:  5'- cGguACAACugggagccccuacGCAGC--CGGGG-CGGCg -3'
miRNA:   3'- -CguUGUUGu------------CGUCGuuGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 106090 0.66 0.94448
Target:  5'- --cACAGCGGCGaucGCGACGucGGcCGGCg -3'
miRNA:   3'- cguUGUUGUCGU---CGUUGCc-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 63003 0.66 0.948918
Target:  5'- gGCccuCGGCGGCcGCGcccgcGCGGGcGcCGGCg -3'
miRNA:   3'- -CGuu-GUUGUCGuCGU-----UGCCC-CaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 68591 0.66 0.94448
Target:  5'- gGCG--GGCcGCGGgAGCGGGGccgaCGGCg -3'
miRNA:   3'- -CGUugUUGuCGUCgUUGCCCCa---GCCG- -5'
23668 3' -53.8 NC_005261.1 + 63575 0.66 0.94448
Target:  5'- gGCAugAugGGCccgaagAGCGGCGcGGGgcccugUGGCc -3'
miRNA:   3'- -CGUugUugUCG------UCGUUGC-CCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 127794 0.66 0.939317
Target:  5'- aGCGGCGggccggcGCcGCGGCGGCGGGccgcUCGcGCu -3'
miRNA:   3'- -CGUUGU-------UGuCGUCGUUGCCCc---AGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 76155 0.66 0.938346
Target:  5'- gGCGGCGcacgacgccguggcGCuGCAGUAcgaGCGGGGccUgGGCg -3'
miRNA:   3'- -CGUUGU--------------UGuCGUCGU---UGCCCC--AgCCG- -5'
23668 3' -53.8 NC_005261.1 + 99351 0.66 0.939799
Target:  5'- aGCAGCAGCGcGCAcGUGACGaGGUCcaGCg -3'
miRNA:   3'- -CGUUGUUGU-CGU-CGUUGCcCCAGc-CG- -5'
23668 3' -53.8 NC_005261.1 + 90206 0.66 0.94448
Target:  5'- cGCGGgGGCGGCGgagcgcccucgcGCGGCGGGcgggcgcgccGUCGGg -3'
miRNA:   3'- -CGUUgUUGUCGU------------CGUUGCCC----------CAGCCg -5'
23668 3' -53.8 NC_005261.1 + 67869 0.66 0.939799
Target:  5'- cGCGGCAACucccgGGCGGCGcGGGUaaGCg -3'
miRNA:   3'- -CGUUGUUGucg--UCGUUGC-CCCAgcCG- -5'
23668 3' -53.8 NC_005261.1 + 112401 0.66 0.94448
Target:  5'- aCAGCGACAGCgAGCGcccgACGGGcaUCuGCg -3'
miRNA:   3'- cGUUGUUGUCG-UCGU----UGCCCc-AGcCG- -5'
23668 3' -53.8 NC_005261.1 + 77903 0.66 0.948918
Target:  5'- cGCuGCAGCAGgaggugagcCAGCuGCGGGc-CGGCu -3'
miRNA:   3'- -CGuUGUUGUC---------GUCGuUGCCCcaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 137753 0.66 0.94448
Target:  5'- uCGGC-GCGcGCGGgGGCGGGGUgCGGg -3'
miRNA:   3'- cGUUGuUGU-CGUCgUUGCCCCA-GCCg -5'
23668 3' -53.8 NC_005261.1 + 70 0.66 0.94448
Target:  5'- uCGGC-GCGcGCGGgGGCGGGGUgCGGg -3'
miRNA:   3'- cGUUGuUGU-CGUCgUUGCCCCA-GCCg -5'
23668 3' -53.8 NC_005261.1 + 24385 0.66 0.948918
Target:  5'- -gGugGGCucGuCGGCGGCGGGG-CGGUc -3'
miRNA:   3'- cgUugUUGu-C-GUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 23538 0.66 0.939317
Target:  5'- aGCGGCAGaGGCGGCAGgagccgucgcaggUGGGGcagGGCu -3'
miRNA:   3'- -CGUUGUUgUCGUCGUU-------------GCCCCag-CCG- -5'
23668 3' -53.8 NC_005261.1 + 99750 0.66 0.939799
Target:  5'- cGCcAC-ACGGcCAGCAcgucggACGGGGagaggCGGCc -3'
miRNA:   3'- -CGuUGuUGUC-GUCGU------UGCCCCa----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 6429 0.66 0.939799
Target:  5'- uGCucGCGAgGGCGGUc-CGGGGgcCGGCc -3'
miRNA:   3'- -CGu-UGUUgUCGUCGuuGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 122441 0.66 0.94448
Target:  5'- -aAACcACAGCAGcCAGCGGuaGGccgUGGCa -3'
miRNA:   3'- cgUUGuUGUCGUC-GUUGCC--CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 2359 0.66 0.946285
Target:  5'- uGCGACAuccaggccacgcgccGCcGCAGCGGCGcgcuGG-CGGCg -3'
miRNA:   3'- -CGUUGU---------------UGuCGUCGUUGCc---CCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.