miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 35534 0.98 0.021605
Target:  5'- gGCAACAACAGCAGCAACGGuGG-CGGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 1405 0.93 0.04594
Target:  5'- cGCGGCcGCGGCGGCGGCGGGGgCGGCg -3'
miRNA:   3'- -CGUUGuUGUCGUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 98904 0.93 0.048559
Target:  5'- cGCGugAACAGCGGguCGGCGGGGUCGGCu -3'
miRNA:   3'- -CGUugUUGUCGUC--GUUGCCCCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 14347 0.91 0.060399
Target:  5'- aGCAGCAGCGGCAGCAGCcgcggccGGGG-CGGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUG-------CCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 129641 0.88 0.101633
Target:  5'- gGCGGCAACGGUGGCGGCGGcGG-CGGCa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 74875 0.88 0.104403
Target:  5'- gGCGgacGCGGCGGCGGCGGCGGaGUCGGCg -3'
miRNA:   3'- -CGU---UGUUGUCGUCGUUGCCcCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 103857 0.88 0.104403
Target:  5'- cGCgAGCcGCGGCGGCGGCGGGG-CGGCg -3'
miRNA:   3'- -CG-UUGuUGUCGUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 18776 0.87 0.113143
Target:  5'- -gGGCAACAGCAGCGGCGaGGGUgcCGGCu -3'
miRNA:   3'- cgUUGUUGUCGUCGUUGC-CCCA--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 383 0.86 0.125864
Target:  5'- gGUGGCGGCGGCGGCGGCGGcGG-CGGCa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 138054 0.86 0.125864
Target:  5'- gGUGGCGGCGGCGGCGGCGGcGG-CGGCa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 127637 0.85 0.151351
Target:  5'- cGCGACGGCGGCGGCGcCGGGGggCGcGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUuGCCCCa-GC-CG- -5'
23668 3' -53.8 NC_005261.1 + 59785 0.84 0.167945
Target:  5'- cGCAGCGACGGCGGCgGGCGGcaGGcCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCG-UUGCC--CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 137975 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 137939 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 292 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 256 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 129731 0.84 0.181441
Target:  5'- uGCAGCGGCAG-GGCGGCGGGGccCGGCc -3'
miRNA:   3'- -CGUUGUUGUCgUCGUUGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 88803 0.83 0.211333
Target:  5'- cGCAGCAggACGcCGGCGGCGGGG-CGGCg -3'
miRNA:   3'- -CGUUGU--UGUcGUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 58220 0.82 0.216709
Target:  5'- cCAGCAGCGcgcccGCGGCGGCGGGGuccUCGGCc -3'
miRNA:   3'- cGUUGUUGU-----CGUCGUUGCCCC---AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 109327 0.81 0.245367
Target:  5'- cGCGA--GC-GCGGCcGCGGGGUCGGCg -3'
miRNA:   3'- -CGUUguUGuCGUCGuUGCCCCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.