miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 70 0.66 0.94448
Target:  5'- uCGGC-GCGcGCGGgGGCGGGGUgCGGg -3'
miRNA:   3'- cGUUGuUGU-CGUCgUUGCCCCA-GCCg -5'
23668 3' -53.8 NC_005261.1 + 256 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 292 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 328 0.75 0.532706
Target:  5'- uGCGGCGGCGGCuGCGGCGGcccgcagcccGGcgCGGCc -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC----------CCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 383 0.86 0.125864
Target:  5'- gGUGGCGGCGGCGGCGGCGGcGG-CGGCa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 993 0.67 0.912666
Target:  5'- aGCGGaggaGACGGgGGCGggggGCGGGGggCGGg -3'
miRNA:   3'- -CGUUg---UUGUCgUCGU----UGCCCCa-GCCg -5'
23668 3' -53.8 NC_005261.1 + 1050 0.75 0.512655
Target:  5'- gGCGGCGGCguuAGCGGC-GCGGGGggcUGGCc -3'
miRNA:   3'- -CGUUGUUG---UCGUCGuUGCCCCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 1405 0.93 0.04594
Target:  5'- cGCGGCcGCGGCGGCGGCGGGGgCGGCg -3'
miRNA:   3'- -CGUUGuUGUCGUCGUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 1442 0.72 0.688061
Target:  5'- aGCAcCAGCGGCGGCGccuCGGcGUgCGGCu -3'
miRNA:   3'- -CGUuGUUGUCGUCGUu--GCCcCA-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 1563 0.67 0.923709
Target:  5'- cCGGCcGCAGCGGCGcgccgagcccccaGCGGuuGG-CGGCg -3'
miRNA:   3'- cGUUGuUGUCGUCGU-------------UGCC--CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 1796 0.77 0.448939
Target:  5'- aGCcGCAGCGGCGGCGcccCGGGGUagagccgcgcguaagCGGCc -3'
miRNA:   3'- -CGuUGUUGUCGUCGUu--GCCCCA---------------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 1989 0.7 0.796524
Target:  5'- gGCcauCGGCGGcCAGUucGCGGGGUccaCGGCg -3'
miRNA:   3'- -CGuu-GUUGUC-GUCGu-UGCCCCA---GCCG- -5'
23668 3' -53.8 NC_005261.1 + 2359 0.66 0.946285
Target:  5'- uGCGACAuccaggccacgcgccGCcGCAGCGGCGcgcuGG-CGGCg -3'
miRNA:   3'- -CGUUGU---------------UGuCGUCGUUGCc---CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 2423 0.73 0.643353
Target:  5'- cGCGGCGGCGGgccgcgaucucggcCAGCGccuCGGGGUCgaaGGCg -3'
miRNA:   3'- -CGUUGUUGUC--------------GUCGUu--GCCCCAG---CCG- -5'
23668 3' -53.8 NC_005261.1 + 2587 0.75 0.541822
Target:  5'- gGCGGCAcGCGGCggaagccgccgucGGCGGCGGGGccgccgggCGGCa -3'
miRNA:   3'- -CGUUGU-UGUCG-------------UCGUUGCCCCa-------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 2656 0.73 0.656919
Target:  5'- gGCAGCGGCGGCucccgccGCGcUGGGGaccCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGu------CGUuGCCCCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 2820 0.69 0.856648
Target:  5'- gGCGGCccCAGCccgagcucgGGCGGCaGGGcCGGCg -3'
miRNA:   3'- -CGUUGuuGUCG---------UCGUUGcCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 3530 0.73 0.624546
Target:  5'- cGCGGCGgccgccucggcgcGCAGC-GCGGCGGGcG-CGGCg -3'
miRNA:   3'- -CGUUGU-------------UGUCGuCGUUGCCC-CaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 3846 0.73 0.615147
Target:  5'- gGCGGCAGCGGCgccGGCGccGCGcGGcCGGCg -3'
miRNA:   3'- -CGUUGUUGUCG---UCGU--UGCcCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 4395 0.69 0.847821
Target:  5'- cGCGGCcgGGCGGCGGCGGCGcgcugccGGGcCaGGCc -3'
miRNA:   3'- -CGUUG--UUGUCGUCGUUGC-------CCCaG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.