miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 138054 0.86 0.125864
Target:  5'- gGUGGCGGCGGCGGCGGCGGcGG-CGGCa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 138021 0.71 0.728859
Target:  5'- cGCAGCccggcGCGGCccGGCGGCGGuGG-CGGCn -3'
miRNA:   3'- -CGUUGu----UGUCG--UCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 137975 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 137939 0.84 0.181441
Target:  5'- uGCGGCGGCGGCuGCGGCGGcGGcugCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGuCGUUGCC-CCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 137753 0.66 0.94448
Target:  5'- uCGGC-GCGcGCGGgGGCGGGGUgCGGg -3'
miRNA:   3'- cGUUGuUGU-CGUCgUUGCCCCA-GCCg -5'
23668 3' -53.8 NC_005261.1 + 137022 0.69 0.831999
Target:  5'- cGCGGC--CAGCAG-AACGGcGUCGGUg -3'
miRNA:   3'- -CGUUGuuGUCGUCgUUGCCcCAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 136604 0.68 0.900079
Target:  5'- cGCAGCGugGaGCGGCGcgcGCGcgccgaGGG-CGGCg -3'
miRNA:   3'- -CGUUGUugU-CGUCGU---UGC------CCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 136452 0.67 0.922025
Target:  5'- cGCAGgGGCAcGCGGCAgccccagacucgcGCGcGGGcagcagcgagcagcUCGGCg -3'
miRNA:   3'- -CGUUgUUGU-CGUCGU-------------UGC-CCC--------------AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 135057 0.78 0.39156
Target:  5'- gGCGGCAGCGGCccgccgcuuuccGGCGGCGGGcucgCGGCc -3'
miRNA:   3'- -CGUUGUUGUCG------------UCGUUGCCCca--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 134969 0.68 0.906495
Target:  5'- gGCGAC-GCAGaCGGCGaggACGGGGcCgccggGGCg -3'
miRNA:   3'- -CGUUGuUGUC-GUCGU---UGCCCCaG-----CCG- -5'
23668 3' -53.8 NC_005261.1 + 134567 0.68 0.900079
Target:  5'- gGCGGCGccGCGGCuGCGcaggGCGGGccUGGCg -3'
miRNA:   3'- -CGUUGU--UGUCGuCGU----UGCCCcaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 134220 0.7 0.823394
Target:  5'- cGCGGCGGcCGGCAGCGuCGGcGU-GGCg -3'
miRNA:   3'- -CGUUGUU-GUCGUCGUuGCCcCAgCCG- -5'
23668 3' -53.8 NC_005261.1 + 133548 0.72 0.677716
Target:  5'- cGCAGC-GCAGCAuGCugcuCGGGGggcggaCGGCu -3'
miRNA:   3'- -CGUUGuUGUCGU-CGuu--GCCCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 131893 0.67 0.924266
Target:  5'- cGCAcGCGACGGCGcGCAcccgcuggACGGGcuuuUUGGCg -3'
miRNA:   3'- -CGU-UGUUGUCGU-CGU--------UGCCCc---AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 130623 0.67 0.93487
Target:  5'- cGCcuuCAACAGC-GC-GCGGGG-CGcGCg -3'
miRNA:   3'- -CGuu-GUUGUCGuCGuUGCCCCaGC-CG- -5'
23668 3' -53.8 NC_005261.1 + 130172 0.66 0.953113
Target:  5'- uCAGCGGCGcCGGCAGCaGGGagcugaCGGCc -3'
miRNA:   3'- cGUUGUUGUcGUCGUUGcCCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 129731 0.84 0.181441
Target:  5'- uGCAGCGGCAG-GGCGGCGGGGccCGGCc -3'
miRNA:   3'- -CGUUGUUGUCgUCGUUGCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 129641 0.88 0.101633
Target:  5'- gGCGGCAACGGUGGCGGCGGcGG-CGGCa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 129598 0.8 0.312025
Target:  5'- cGgGACAcGCGGCAauuucGCGGCGGGGUCGGg -3'
miRNA:   3'- -CgUUGU-UGUCGU-----CGUUGCCCCAGCCg -5'
23668 3' -53.8 NC_005261.1 + 129346 0.66 0.948918
Target:  5'- --cGCcGCGGUAGCGcccccuuccgcGCGcGGGUCGcGCg -3'
miRNA:   3'- cguUGuUGUCGUCGU-----------UGC-CCCAGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.