miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 3' -53.8 NC_005261.1 + 97824 0.81 0.245367
Target:  5'- cGCA--GACGGCGGCAaaaACGGGGgCGGCg -3'
miRNA:   3'- -CGUugUUGUCGUCGU---UGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 47868 0.81 0.251464
Target:  5'- cGUAGcCAGCGGCAGCGucCGGGGagCGGCg -3'
miRNA:   3'- -CGUU-GUUGUCGUCGUu-GCCCCa-GCCG- -5'
23668 3' -53.8 NC_005261.1 + 103603 0.81 0.251464
Target:  5'- cGUGGCcGCGGCGGCAGCGcGGGaggCGGCg -3'
miRNA:   3'- -CGUUGuUGUCGUCGUUGC-CCCa--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 12071 0.81 0.251464
Target:  5'- uGCGGCAGCGGCGuccGCGcCGGGG-CGGCu -3'
miRNA:   3'- -CGUUGUUGUCGU---CGUuGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 55997 0.8 0.283827
Target:  5'- gGCAACcGCGGCGGgGGCGGGGgCGGg -3'
miRNA:   3'- -CGUUGuUGUCGUCgUUGCCCCaGCCg -5'
23668 3' -53.8 NC_005261.1 + 103316 0.8 0.283827
Target:  5'- uGCAGCGGCAGCAGCAGCGcguccaGGcGcCGGUa -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGC------CC-CaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 39356 0.8 0.290683
Target:  5'- cGCGGCGGCAGCcgccucaucGGCGGcCGGGGagGGCg -3'
miRNA:   3'- -CGUUGUUGUCG---------UCGUU-GCCCCagCCG- -5'
23668 3' -53.8 NC_005261.1 + 90078 0.8 0.304781
Target:  5'- gGCGcCGAgGGCAGCGACGGGGgcccguucgcCGGCu -3'
miRNA:   3'- -CGUuGUUgUCGUCGUUGCCCCa---------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 129598 0.8 0.312025
Target:  5'- cGgGACAcGCGGCAauuucGCGGCGGGGUCGGg -3'
miRNA:   3'- -CgUUGU-UGUCGU-----CGUUGCCCCAGCCg -5'
23668 3' -53.8 NC_005261.1 + 52601 0.79 0.334535
Target:  5'- cGUGGCGAuCAGCAG-AACGGGGaCGGCg -3'
miRNA:   3'- -CGUUGUU-GUCGUCgUUGCCCCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 5512 0.79 0.342298
Target:  5'- cGCGGCAGCGGCGGCGAggccgcCGGcuUCGGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUU------GCCccAGCCG- -5'
23668 3' -53.8 NC_005261.1 + 6081 0.79 0.35019
Target:  5'- aCGGCGGCGGCaAGCAACGGuGG-CGGUg -3'
miRNA:   3'- cGUUGUUGUCG-UCGUUGCC-CCaGCCG- -5'
23668 3' -53.8 NC_005261.1 + 127833 0.78 0.358211
Target:  5'- cGCGGCcGCgAGCAGCgGACGGGGcggucgCGGCg -3'
miRNA:   3'- -CGUUGuUG-UCGUCG-UUGCCCCa-----GCCG- -5'
23668 3' -53.8 NC_005261.1 + 32494 0.78 0.35902
Target:  5'- cCGGCGACGGCGGCAucgGCGGGGgguccgcgccgcgccCGGCc -3'
miRNA:   3'- cGUUGUUGUCGUCGU---UGCCCCa--------------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 128103 0.78 0.374634
Target:  5'- gGCgAGCGGC-GCGGC-GCGGGGUCGGg -3'
miRNA:   3'- -CG-UUGUUGuCGUCGuUGCCCCAGCCg -5'
23668 3' -53.8 NC_005261.1 + 93623 0.78 0.38219
Target:  5'- cGCGACGccggccaGCAGCAGCAGCGcGaGGUCcGCg -3'
miRNA:   3'- -CGUUGU-------UGUCGUCGUUGC-C-CCAGcCG- -5'
23668 3' -53.8 NC_005261.1 + 135057 0.78 0.39156
Target:  5'- gGCGGCAGCGGCccgccgcuuuccGGCGGCGGGcucgCGGCc -3'
miRNA:   3'- -CGUUGUUGUCG------------UCGUUGCCCca--GCCG- -5'
23668 3' -53.8 NC_005261.1 + 97734 0.78 0.400208
Target:  5'- gGCuAACGGCuGGCAGgGGCGGGGcgggcUCGGCg -3'
miRNA:   3'- -CG-UUGUUG-UCGUCgUUGCCCC-----AGCCG- -5'
23668 3' -53.8 NC_005261.1 + 23186 0.77 0.408977
Target:  5'- gGCGACAGCgAGCGcGCcGCGGGGcccgcagCGGCg -3'
miRNA:   3'- -CGUUGUUG-UCGU-CGuUGCCCCa------GCCG- -5'
23668 3' -53.8 NC_005261.1 + 68702 0.77 0.415186
Target:  5'- cGCgGACGACGGCGGCGccggcccucacgcgGCGGGcGcCGGCg -3'
miRNA:   3'- -CG-UUGUUGUCGUCGU--------------UGCCC-CaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.