miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 5' -59.2 NC_005261.1 + 74827 0.66 0.734458
Target:  5'- uGGCCGCCGUGCUcgCggaCCuggggaggcggcgCGCCg -3'
miRNA:   3'- gUCGGCGGCGCGAuaGga-GGua-----------GCGG- -5'
23668 5' -59.2 NC_005261.1 + 72488 0.66 0.744061
Target:  5'- cCAGCgccaggagCGCCGCGCgaagcgggcgccgcAUCCUCCuuggcggcUCGCUg -3'
miRNA:   3'- -GUCG--------GCGGCGCGa-------------UAGGAGGu-------AGCGG- -5'
23668 5' -59.2 NC_005261.1 + 12146 0.66 0.740231
Target:  5'- gCGGCgGCCGCGCaggCC-CCAa-GCCc -3'
miRNA:   3'- -GUCGgCGGCGCGauaGGaGGUagCGG- -5'
23668 5' -59.2 NC_005261.1 + 18593 0.66 0.730593
Target:  5'- gGGCgcaGCCGUGCgaggUgUCCGUCGCg -3'
miRNA:   3'- gUCGg--CGGCGCGaua-GgAGGUAGCGg -5'
23668 5' -59.2 NC_005261.1 + 80036 0.66 0.759224
Target:  5'- -cGUCGCCGU-Cg--CCgCCGUCGCCa -3'
miRNA:   3'- guCGGCGGCGcGauaGGaGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 106829 0.66 0.730593
Target:  5'- gCAGCgCGUgGUGCgcGUCgUCCAgccCGCCg -3'
miRNA:   3'- -GUCG-GCGgCGCGa-UAGgAGGUa--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 110015 0.66 0.749777
Target:  5'- -cGCCGgCGcCGCcGUCCUU--UCGCCu -3'
miRNA:   3'- guCGGCgGC-GCGaUAGGAGguAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 107314 0.66 0.740231
Target:  5'- aCGGCCGCCGCGUg---CagC-UCGCCc -3'
miRNA:   3'- -GUCGGCGGCGCGauagGagGuAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 33953 0.66 0.730593
Target:  5'- -cGCCGCCuGuCGCUGgaCCUUCugcCGCCg -3'
miRNA:   3'- guCGGCGG-C-GCGAUa-GGAGGua-GCGG- -5'
23668 5' -59.2 NC_005261.1 + 50654 0.66 0.730593
Target:  5'- -cGCCGgcgaaCGCGCUcgCCcaagUCCG-CGCCg -3'
miRNA:   3'- guCGGCg----GCGCGAuaGG----AGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 7939 0.66 0.744061
Target:  5'- -uGCuCGCCGCcUUGUCCUCCccAgggugggcaaaucgaUCGCCg -3'
miRNA:   3'- guCG-GCGGCGcGAUAGGAGG--U---------------AGCGG- -5'
23668 5' -59.2 NC_005261.1 + 43968 0.66 0.749777
Target:  5'- aCGGCCGCCGgGCU---CUUCGaCGUCu -3'
miRNA:   3'- -GUCGGCGGCgCGAuagGAGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 65018 0.66 0.740231
Target:  5'- gUAGaCCGCCGUGCaGUCCUCgGgcaacUCaCCg -3'
miRNA:   3'- -GUC-GGCGGCGCGaUAGGAGgU-----AGcGG- -5'
23668 5' -59.2 NC_005261.1 + 125714 0.66 0.737348
Target:  5'- aCGGCCGCCGCgggcucgGCUGgggCCgccgcaagggggCCGggGCCa -3'
miRNA:   3'- -GUCGGCGGCG-------CGAUa--GGa-----------GGUagCGG- -5'
23668 5' -59.2 NC_005261.1 + 91460 0.66 0.759224
Target:  5'- aCGGCCccGCC-CGCg--CCUCCcagcggCGCCg -3'
miRNA:   3'- -GUCGG--CGGcGCGauaGGAGGua----GCGG- -5'
23668 5' -59.2 NC_005261.1 + 107688 0.66 0.757343
Target:  5'- -uGCCGCCGCgGCgggggcgccgCCgaaCGUCGCUg -3'
miRNA:   3'- guCGGCGGCG-CGaua-------GGag-GUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 22603 0.66 0.749777
Target:  5'- -cGCUGCCgGCGC-AUCUcgucCCGUCGCg -3'
miRNA:   3'- guCGGCGG-CGCGaUAGGa---GGUAGCGg -5'
23668 5' -59.2 NC_005261.1 + 109158 0.66 0.759224
Target:  5'- aCAGCaccagGCCGgGCagGUUCUCCGcuagcagCGCCg -3'
miRNA:   3'- -GUCGg----CGGCgCGa-UAGGAGGUa------GCGG- -5'
23668 5' -59.2 NC_005261.1 + 84444 0.66 0.730593
Target:  5'- cCAGCCcccggGCCGCGCagccacgCgCUCCGUCaGCUc -3'
miRNA:   3'- -GUCGG-----CGGCGCGaua----G-GAGGUAG-CGG- -5'
23668 5' -59.2 NC_005261.1 + 131102 0.66 0.740231
Target:  5'- -cGUCGCCGCGCcgcccaaccCCUCagggcUCGCCu -3'
miRNA:   3'- guCGGCGGCGCGaua------GGAGgu---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.