miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 5' -59.2 NC_005261.1 + 87371 0.66 0.730593
Target:  5'- -cGCCcaCCGCGCggcagaUGUCCUcggCCGUCGUCu -3'
miRNA:   3'- guCGGc-GGCGCG------AUAGGA---GGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 44239 0.66 0.740231
Target:  5'- uGGCCGCCcaGCGCg--CggCCGaCGCCg -3'
miRNA:   3'- gUCGGCGG--CGCGauaGgaGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 125714 0.66 0.737348
Target:  5'- aCGGCCGCCGCgggcucgGCUGgggCCgccgcaagggggCCGggGCCa -3'
miRNA:   3'- -GUCGGCGGCG-------CGAUa--GGa-----------GGUagCGG- -5'
23668 5' -59.2 NC_005261.1 + 105300 0.66 0.730593
Target:  5'- gGGCgCGCgaGCGCgggGUCCUCgCAcucCGCCc -3'
miRNA:   3'- gUCG-GCGg-CGCGa--UAGGAG-GUa--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 84957 0.66 0.730593
Target:  5'- gCGGCCGCCgaggcgucggGCGC-GUCCgCgAUgCGCCg -3'
miRNA:   3'- -GUCGGCGG----------CGCGaUAGGaGgUA-GCGG- -5'
23668 5' -59.2 NC_005261.1 + 30054 0.66 0.740231
Target:  5'- cCGGCCGCgGC-CUG-CgCUCCAgacgCGCUa -3'
miRNA:   3'- -GUCGGCGgCGcGAUaG-GAGGUa---GCGG- -5'
23668 5' -59.2 NC_005261.1 + 37754 0.66 0.730593
Target:  5'- gCGGgCGCCGCGCcg-CCcaagcgCCggCGCCc -3'
miRNA:   3'- -GUCgGCGGCGCGauaGGa-----GGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 74827 0.66 0.734458
Target:  5'- uGGCCGCCGUGCUcgCggaCCuggggaggcggcgCGCCg -3'
miRNA:   3'- gUCGGCGGCGCGAuaGga-GGua-----------GCGG- -5'
23668 5' -59.2 NC_005261.1 + 12146 0.66 0.740231
Target:  5'- gCGGCgGCCGCGCaggCC-CCAa-GCCc -3'
miRNA:   3'- -GUCGgCGGCGCGauaGGaGGUagCGG- -5'
23668 5' -59.2 NC_005261.1 + 133173 0.66 0.777781
Target:  5'- -cGCCGCCgacaaccgcgGCGCcGUCgaggagUUCAUCGCCg -3'
miRNA:   3'- guCGGCGG----------CGCGaUAGg-----AGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 65018 0.66 0.740231
Target:  5'- gUAGaCCGCCGUGCaGUCCUCgGgcaacUCaCCg -3'
miRNA:   3'- -GUC-GGCGGCGCGaUAGGAGgU-----AGcGG- -5'
23668 5' -59.2 NC_005261.1 + 106829 0.66 0.730593
Target:  5'- gCAGCgCGUgGUGCgcGUCgUCCAgccCGCCg -3'
miRNA:   3'- -GUCG-GCGgCGCGa-UAGgAGGUa--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 18593 0.66 0.730593
Target:  5'- gGGCgcaGCCGUGCgaggUgUCCGUCGCg -3'
miRNA:   3'- gUCGg--CGGCGCGaua-GgAGGUAGCGg -5'
23668 5' -59.2 NC_005261.1 + 50654 0.66 0.730593
Target:  5'- -cGCCGgcgaaCGCGCUcgCCcaagUCCG-CGCCg -3'
miRNA:   3'- guCGGCg----GCGCGAuaGG----AGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 106273 0.66 0.730593
Target:  5'- -uGCCGCCGgGCggcCCgugcaaacgCCGUCGaCCu -3'
miRNA:   3'- guCGGCGGCgCGauaGGa--------GGUAGC-GG- -5'
23668 5' -59.2 NC_005261.1 + 107314 0.66 0.740231
Target:  5'- aCGGCCGCCGCGUg---CagC-UCGCCc -3'
miRNA:   3'- -GUCGGCGGCGCGauagGagGuAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 68663 0.66 0.730593
Target:  5'- -cGCCGcCCGCGCcg-CCggCGUcCGCCg -3'
miRNA:   3'- guCGGC-GGCGCGauaGGagGUA-GCGG- -5'
23668 5' -59.2 NC_005261.1 + 37724 0.66 0.740231
Target:  5'- uCGGcCCGCCGgaGCc--CC-CCGUCGCCc -3'
miRNA:   3'- -GUC-GGCGGCg-CGauaGGaGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 72972 0.66 0.730593
Target:  5'- -cGCCGCCGCGgggGUCCgcgagcgcggCCAgCGCg -3'
miRNA:   3'- guCGGCGGCGCga-UAGGa---------GGUaGCGg -5'
23668 5' -59.2 NC_005261.1 + 84444 0.66 0.730593
Target:  5'- cCAGCCcccggGCCGCGCagccacgCgCUCCGUCaGCUc -3'
miRNA:   3'- -GUCGG-----CGGCGCGaua----G-GAGGUAG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.