miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 5' -59.2 NC_005261.1 + 559 0.72 0.416282
Target:  5'- uCGGCCGCCGCGCggugacacuacgcUCCUCCccccucccccucuguUCGCg -3'
miRNA:   3'- -GUCGGCGGCGCGau-----------AGGAGGu--------------AGCGg -5'
23668 5' -59.2 NC_005261.1 + 643 0.77 0.223852
Target:  5'- gCGGCCGCCaGCGCcgcGUCC-CCggCGCCg -3'
miRNA:   3'- -GUCGGCGG-CGCGa--UAGGaGGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 1201 0.67 0.669329
Target:  5'- cCGGgCGCgGCGCggaccccccgCCgaugccgCCGUCGCCg -3'
miRNA:   3'- -GUCgGCGgCGCGaua-------GGa------GGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 1335 0.7 0.5315
Target:  5'- -cGCCGCCGCGCcgcgCCUgcaCCAgCGUCu -3'
miRNA:   3'- guCGGCGGCGCGaua-GGA---GGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 1650 0.69 0.580856
Target:  5'- cCAG-CGCCGCGCUcugcgcggccauGUCCUugcgcCCGUCgaGCCg -3'
miRNA:   3'- -GUCgGCGGCGCGA------------UAGGA-----GGUAG--CGG- -5'
23668 5' -59.2 NC_005261.1 + 2033 0.7 0.5315
Target:  5'- uCAGCCGCCGcCGCg--CCgcggCCA--GCCg -3'
miRNA:   3'- -GUCGGCGGC-GCGauaGGa---GGUagCGG- -5'
23668 5' -59.2 NC_005261.1 + 2259 0.78 0.193456
Target:  5'- aGGCCGCCgGCGCUcGUCCUcgCCGggcggCGCCg -3'
miRNA:   3'- gUCGGCGG-CGCGA-UAGGA--GGUa----GCGG- -5'
23668 5' -59.2 NC_005261.1 + 2669 0.67 0.720872
Target:  5'- --cCCGCCGCGCUGgggacCCggCGgcgCGCCg -3'
miRNA:   3'- gucGGCGGCGCGAUa----GGagGUa--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 2755 0.68 0.621015
Target:  5'- gGGCCGUCGCgGCgggCCUCgAggccCGCCc -3'
miRNA:   3'- gUCGGCGGCG-CGauaGGAGgUa---GCGG- -5'
23668 5' -59.2 NC_005261.1 + 3373 0.71 0.483741
Target:  5'- gGGCCGCgaGCGCgg-CCgCCAgccgCGCCg -3'
miRNA:   3'- gUCGGCGg-CGCGauaGGaGGUa---GCGG- -5'
23668 5' -59.2 NC_005261.1 + 3457 0.71 0.474434
Target:  5'- gGGCCGCCGCGCcgcgCgUCgAguaccgCGCCa -3'
miRNA:   3'- gUCGGCGGCGCGaua-GgAGgUa-----GCGG- -5'
23668 5' -59.2 NC_005261.1 + 3506 0.74 0.324862
Target:  5'- -cGCCGCCaGCGCggccgCCUCCAgCGCg -3'
miRNA:   3'- guCGGCGG-CGCGaua--GGAGGUaGCGg -5'
23668 5' -59.2 NC_005261.1 + 3747 0.67 0.671334
Target:  5'- gCGGCgCaCCGCGCcg-CCUCUAgCGCCu -3'
miRNA:   3'- -GUCG-GcGGCGCGauaGGAGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 3781 0.69 0.560964
Target:  5'- aGGCCGCaGCGCagcgGUCCgCCAgcUCGCg -3'
miRNA:   3'- gUCGGCGgCGCGa---UAGGaGGU--AGCGg -5'
23668 5' -59.2 NC_005261.1 + 3811 0.68 0.641171
Target:  5'- gCAGCCGCuCGCGCgcugCCgcgggcCCGggCGCUg -3'
miRNA:   3'- -GUCGGCG-GCGCGaua-GGa-----GGUa-GCGG- -5'
23668 5' -59.2 NC_005261.1 + 3919 0.71 0.456093
Target:  5'- -cGCCGCCgGCGCcggCCUCCGgguagGCCa -3'
miRNA:   3'- guCGGCGG-CGCGauaGGAGGUag---CGG- -5'
23668 5' -59.2 NC_005261.1 + 4218 0.66 0.777781
Target:  5'- -cGUCGCgGCGCgcguacaccagGUCCaCCAgCGCCg -3'
miRNA:   3'- guCGGCGgCGCGa----------UAGGaGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 4307 0.68 0.641171
Target:  5'- gCGGCCGCCGCGUagcgcgcggCCgCC-UCGCg -3'
miRNA:   3'- -GUCGGCGGCGCGaua------GGaGGuAGCGg -5'
23668 5' -59.2 NC_005261.1 + 4404 0.69 0.590859
Target:  5'- gCGGCgGCgGCGCgcugCCgggCCAggccUCGCCg -3'
miRNA:   3'- -GUCGgCGgCGCGaua-GGa--GGU----AGCGG- -5'
23668 5' -59.2 NC_005261.1 + 4895 0.68 0.641171
Target:  5'- gCGGCCGCCucggcuucggcgGCgGCUG-CCUCCGcCGCg -3'
miRNA:   3'- -GUCGGCGG------------CG-CGAUaGGAGGUaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.