Results 1 - 20 of 378 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23668 | 5' | -59.2 | NC_005261.1 | + | 133173 | 0.66 | 0.777781 |
Target: 5'- -cGCCGCCgacaaccgcgGCGCcGUCgaggagUUCAUCGCCg -3' miRNA: 3'- guCGGCGG----------CGCGaUAGg-----AGGUAGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 67297 | 0.78 | 0.175254 |
Target: 5'- -cGCCGCCGCGCgcgcgCCgCCGUCgGCCg -3' miRNA: 3'- guCGGCGGCGCGaua--GGaGGUAG-CGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 80254 | 0.78 | 0.178768 |
Target: 5'- aAGCCGCCGCGCgccagguacgUCUCCAggcCGCCc -3' miRNA: 3'- gUCGGCGGCGCGaua-------GGAGGUa--GCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 60428 | 0.78 | 0.184156 |
Target: 5'- gGGCCGCCGCGCUcgcGUCgCUCa--CGCCu -3' miRNA: 3'- gUCGGCGGCGCGA---UAG-GAGguaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 106238 | 0.78 | 0.193456 |
Target: 5'- gCGGCCGCCGCGCccuaCCgggCCGcCGCCg -3' miRNA: 3'- -GUCGGCGGCGCGaua-GGa--GGUaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 2259 | 0.78 | 0.193456 |
Target: 5'- aGGCCGCCgGCGCUcGUCCUcgCCGggcggCGCCg -3' miRNA: 3'- gUCGGCGG-CGCGA-UAGGA--GGUa----GCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 125201 | 0.77 | 0.198258 |
Target: 5'- aUAGUCGUCgGCGCUGUCgCUgCUAUCGCCg -3' miRNA: 3'- -GUCGGCGG-CGCGAUAG-GA-GGUAGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 82995 | 0.77 | 0.208175 |
Target: 5'- gCGGCCGCCucGCGCaccgagCCgCCGUCGCCg -3' miRNA: 3'- -GUCGGCGG--CGCGaua---GGaGGUAGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 102423 | 0.77 | 0.208175 |
Target: 5'- -uGCCGCUGCGCggccgCCUCCucggcgCGCCg -3' miRNA: 3'- guCGGCGGCGCGaua--GGAGGua----GCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 93806 | 0.78 | 0.170947 |
Target: 5'- -cGCCGCCGCGCg--CCgccgCCAcCGCCg -3' miRNA: 3'- guCGGCGGCGCGauaGGa---GGUaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 85027 | 0.79 | 0.154656 |
Target: 5'- gCGGCCGCCGCGCc--CCggCCAcgaUCGCCg -3' miRNA: 3'- -GUCGGCGGCGCGauaGGa-GGU---AGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 113582 | 0.79 | 0.150809 |
Target: 5'- uGGCCGCCGCGCUGggcgaCCUCg--CGCCc -3' miRNA: 3'- gUCGGCGGCGCGAUa----GGAGguaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 106360 | 0.88 | 0.039613 |
Target: 5'- -cGCCGCCGCGCUGacgCCgCCGUCGCCg -3' miRNA: 3'- guCGGCGGCGCGAUa--GGaGGUAGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 102813 | 0.83 | 0.081208 |
Target: 5'- cCAGCCGCCGCGCgccgGUCUgcgCCucgCGCCg -3' miRNA: 3'- -GUCGGCGGCGCGa---UAGGa--GGua-GCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 108321 | 0.82 | 0.095007 |
Target: 5'- aCGGCCGCCGCGUgcUCCgcgaCCcgCGCCa -3' miRNA: 3'- -GUCGGCGGCGCGauAGGa---GGuaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 116922 | 0.81 | 0.119923 |
Target: 5'- aCAGCCGCCGCgggcuGCUGgacgCCUUCcgCGCCa -3' miRNA: 3'- -GUCGGCGGCG-----CGAUa---GGAGGuaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 102238 | 0.81 | 0.119923 |
Target: 5'- uGGCCGCCgucgcccgcugcGCGCUcgCCUCCAgCGCCc -3' miRNA: 3'- gUCGGCGG------------CGCGAuaGGAGGUaGCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 47632 | 0.81 | 0.119923 |
Target: 5'- gCGGCCGCCGCGCgcaccgcGUCCUCCucgacgGCCa -3' miRNA: 3'- -GUCGGCGGCGCGa------UAGGAGGuag---CGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 134028 | 0.81 | 0.123041 |
Target: 5'- -cGCCGCCGCGCUcgCggCCAUgGCCg -3' miRNA: 3'- guCGGCGGCGCGAuaGgaGGUAgCGG- -5' |
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23668 | 5' | -59.2 | NC_005261.1 | + | 106584 | 0.79 | 0.147048 |
Target: 5'- gGGCCGCCGCGCggcgcUCCUCCuggaccUCGUCc -3' miRNA: 3'- gUCGGCGGCGCGau---AGGAGGu-----AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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