miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 5' -59.2 NC_005261.1 + 35568 1.1 0.001147
Target:  5'- gCAGCCGCCGCGCUAUCCUCCAUCGCCc -3'
miRNA:   3'- -GUCGGCGGCGCGAUAGGAGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 106360 0.88 0.039613
Target:  5'- -cGCCGCCGCGCUGacgCCgCCGUCGCCg -3'
miRNA:   3'- guCGGCGGCGCGAUa--GGaGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 102813 0.83 0.081208
Target:  5'- cCAGCCGCCGCGCgccgGUCUgcgCCucgCGCCg -3'
miRNA:   3'- -GUCGGCGGCGCGa---UAGGa--GGua-GCGG- -5'
23668 5' -59.2 NC_005261.1 + 108321 0.82 0.095007
Target:  5'- aCGGCCGCCGCGUgcUCCgcgaCCcgCGCCa -3'
miRNA:   3'- -GUCGGCGGCGCGauAGGa---GGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 47632 0.81 0.119923
Target:  5'- gCGGCCGCCGCGCgcaccgcGUCCUCCucgacgGCCa -3'
miRNA:   3'- -GUCGGCGGCGCGa------UAGGAGGuag---CGG- -5'
23668 5' -59.2 NC_005261.1 + 102238 0.81 0.119923
Target:  5'- uGGCCGCCgucgcccgcugcGCGCUcgCCUCCAgCGCCc -3'
miRNA:   3'- gUCGGCGG------------CGCGAuaGGAGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 116922 0.81 0.119923
Target:  5'- aCAGCCGCCGCgggcuGCUGgacgCCUUCcgCGCCa -3'
miRNA:   3'- -GUCGGCGGCG-----CGAUa---GGAGGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 134028 0.81 0.123041
Target:  5'- -cGCCGCCGCGCUcgCggCCAUgGCCg -3'
miRNA:   3'- guCGGCGGCGCGAuaGgaGGUAgCGG- -5'
23668 5' -59.2 NC_005261.1 + 106584 0.79 0.147048
Target:  5'- gGGCCGCCGCGCggcgcUCCUCCuggaccUCGUCc -3'
miRNA:   3'- gUCGGCGGCGCGau---AGGAGGu-----AGCGG- -5'
23668 5' -59.2 NC_005261.1 + 113582 0.79 0.150809
Target:  5'- uGGCCGCCGCGCUGggcgaCCUCg--CGCCc -3'
miRNA:   3'- gUCGGCGGCGCGAUa----GGAGguaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 85027 0.79 0.154656
Target:  5'- gCGGCCGCCGCGCc--CCggCCAcgaUCGCCg -3'
miRNA:   3'- -GUCGGCGGCGCGauaGGa-GGU---AGCGG- -5'
23668 5' -59.2 NC_005261.1 + 93806 0.78 0.170947
Target:  5'- -cGCCGCCGCGCg--CCgccgCCAcCGCCg -3'
miRNA:   3'- guCGGCGGCGCGauaGGa---GGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 67297 0.78 0.175254
Target:  5'- -cGCCGCCGCGCgcgcgCCgCCGUCgGCCg -3'
miRNA:   3'- guCGGCGGCGCGaua--GGaGGUAG-CGG- -5'
23668 5' -59.2 NC_005261.1 + 80254 0.78 0.178768
Target:  5'- aAGCCGCCGCGCgccagguacgUCUCCAggcCGCCc -3'
miRNA:   3'- gUCGGCGGCGCGaua-------GGAGGUa--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 60428 0.78 0.184156
Target:  5'- gGGCCGCCGCGCUcgcGUCgCUCa--CGCCu -3'
miRNA:   3'- gUCGGCGGCGCGA---UAG-GAGguaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 2259 0.78 0.193456
Target:  5'- aGGCCGCCgGCGCUcGUCCUcgCCGggcggCGCCg -3'
miRNA:   3'- gUCGGCGG-CGCGA-UAGGA--GGUa----GCGG- -5'
23668 5' -59.2 NC_005261.1 + 106238 0.78 0.193456
Target:  5'- gCGGCCGCCGCGCccuaCCgggCCGcCGCCg -3'
miRNA:   3'- -GUCGGCGGCGCGaua-GGa--GGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 125201 0.77 0.198258
Target:  5'- aUAGUCGUCgGCGCUGUCgCUgCUAUCGCCg -3'
miRNA:   3'- -GUCGGCGG-CGCGAUAG-GA-GGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 102423 0.77 0.208175
Target:  5'- -uGCCGCUGCGCggccgCCUCCucggcgCGCCg -3'
miRNA:   3'- guCGGCGGCGCGaua--GGAGGua----GCGG- -5'
23668 5' -59.2 NC_005261.1 + 103457 0.77 0.208175
Target:  5'- uCGGCCGCCGCGC------CCGUCGCCa -3'
miRNA:   3'- -GUCGGCGGCGCGauaggaGGUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.