miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23668 5' -59.2 NC_005261.1 + 59042 0.66 0.759224
Target:  5'- -uGCCGCCGCGCgag-CUCag-CGCg -3'
miRNA:   3'- guCGGCGGCGCGauagGAGguaGCGg -5'
23668 5' -59.2 NC_005261.1 + 133950 0.66 0.759224
Target:  5'- cCAGgCGCgGCGCaUGUUCggCCuUUGCCg -3'
miRNA:   3'- -GUCgGCGgCGCG-AUAGGa-GGuAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 76666 0.66 0.759224
Target:  5'- uCGG-CGCCGUGCUGg---CCcUCGCCg -3'
miRNA:   3'- -GUCgGCGGCGCGAUaggaGGuAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 87454 0.66 0.759224
Target:  5'- -cGCCGCCGCGCc-UgCUCgCAggcgCGCg -3'
miRNA:   3'- guCGGCGGCGCGauAgGAG-GUa---GCGg -5'
23668 5' -59.2 NC_005261.1 + 108352 0.66 0.759224
Target:  5'- gGGCCGCCGCcgucgcaggcGC-AUCCcugcccgcgUCCG-CGCCc -3'
miRNA:   3'- gUCGGCGGCG----------CGaUAGG---------AGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 91460 0.66 0.759224
Target:  5'- aCGGCCccGCC-CGCg--CCUCCcagcggCGCCg -3'
miRNA:   3'- -GUCGG--CGGcGCGauaGGAGGua----GCGG- -5'
23668 5' -59.2 NC_005261.1 + 80036 0.66 0.759224
Target:  5'- -cGUCGCCGU-Cg--CCgCCGUCGCCa -3'
miRNA:   3'- guCGGCGGCGcGauaGGaGGUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 37822 0.66 0.759224
Target:  5'- cCAGCgCGCCGUcaccuggaGCg--CCUUCGcCGCCg -3'
miRNA:   3'- -GUCG-GCGGCG--------CGauaGGAGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 57558 0.66 0.759224
Target:  5'- -cGUCGCaCGCGCccggCUCCggCGCCg -3'
miRNA:   3'- guCGGCG-GCGCGauagGAGGuaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 128847 0.66 0.759224
Target:  5'- uGGCCGCCacgGUGCcccgCCUC-GUCGCUg -3'
miRNA:   3'- gUCGGCGG---CGCGaua-GGAGgUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 58106 0.66 0.759224
Target:  5'- gCGGCaccaGCCGCGCgagcagCCUgccgagcguggCCAcCGCCa -3'
miRNA:   3'- -GUCGg---CGGCGCGaua---GGA-----------GGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 14856 0.66 0.759224
Target:  5'- gCGGCgGCgcauCGCGCaGUUCgCCAUCGCg -3'
miRNA:   3'- -GUCGgCG----GCGCGaUAGGaGGUAGCGg -5'
23668 5' -59.2 NC_005261.1 + 109158 0.66 0.759224
Target:  5'- aCAGCaccagGCCGgGCagGUUCUCCGcuagcagCGCCg -3'
miRNA:   3'- -GUCGg----CGGCgCGa-UAGGAGGUa------GCGG- -5'
23668 5' -59.2 NC_005261.1 + 123441 0.66 0.759224
Target:  5'- gCAGCCGCagcuCGCGCaugacgCCGUCGCg -3'
miRNA:   3'- -GUCGGCG----GCGCGauaggaGGUAGCGg -5'
23668 5' -59.2 NC_005261.1 + 107688 0.66 0.757343
Target:  5'- -uGCCGCCGCgGCgggggcgccgCCgaaCGUCGCUg -3'
miRNA:   3'- guCGGCGGCG-CGaua-------GGag-GUAGCGG- -5'
23668 5' -59.2 NC_005261.1 + 29721 0.66 0.756401
Target:  5'- gAGCCGCCGCuacgaCUGcgaccagaagcuguUCCUCCugcagaGCCu -3'
miRNA:   3'- gUCGGCGGCGc----GAU--------------AGGAGGuag---CGG- -5'
23668 5' -59.2 NC_005261.1 + 92552 0.66 0.749777
Target:  5'- gUAGCUGucCCGCGCgcgCC-CCGcgCGCCg -3'
miRNA:   3'- -GUCGGC--GGCGCGauaGGaGGUa-GCGG- -5'
23668 5' -59.2 NC_005261.1 + 31780 0.66 0.749777
Target:  5'- -cGCCGCgGUGCUGcCCgcggCgCAgugCGCCg -3'
miRNA:   3'- guCGGCGgCGCGAUaGGa---G-GUa--GCGG- -5'
23668 5' -59.2 NC_005261.1 + 43968 0.66 0.749777
Target:  5'- aCGGCCGCCGgGCU---CUUCGaCGUCu -3'
miRNA:   3'- -GUCGGCGGCgCGAuagGAGGUaGCGG- -5'
23668 5' -59.2 NC_005261.1 + 53244 0.66 0.749777
Target:  5'- cCAGCuCGCCccGCGC-GUCC-CgGUCGCa -3'
miRNA:   3'- -GUCG-GCGG--CGCGaUAGGaGgUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.