Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23673 | 3' | -55.3 | NC_005261.1 | + | 133147 | 0.66 | 0.93162 |
Target: 5'- cGGUgCgcgCUCGccgCCGuCGGCGUCGCCg-- -3' miRNA: 3'- -CCA-Ga--GAGUa--GGU-GUCGCAGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 131146 | 0.66 | 0.920918 |
Target: 5'- uGGUCUCU--UuuGCGGCGcUCGCCg-- -3' miRNA: 3'- -CCAGAGAguAggUGUCGC-AGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 125326 | 0.69 | 0.794022 |
Target: 5'- cGGcCUCggCGUCCGCAGCG-CGCagggCGu -3' miRNA: 3'- -CCaGAGa-GUAGGUGUCGCaGCGga--GC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 124845 | 0.68 | 0.837353 |
Target: 5'- aGGUC-CUCgcgcagGUCUGCGGCGUCGUCg-- -3' miRNA: 3'- -CCAGaGAG------UAGGUGUCGCAGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 124743 | 0.68 | 0.845489 |
Target: 5'- --cCUCUCcccgcagCCGCAGCGgcCGCCUCc -3' miRNA: 3'- ccaGAGAGua-----GGUGUCGCa-GCGGAGc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 123711 | 0.66 | 0.936611 |
Target: 5'- cGUaCUCggcCAUCaGCAGCGUCGUCgCGg -3' miRNA: 3'- cCA-GAGa--GUAGgUGUCGCAGCGGaGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 122510 | 0.71 | 0.697527 |
Target: 5'- cGGgCUCUCAaCCAUGGgGUCGCCa-- -3' miRNA: 3'- -CCaGAGAGUaGGUGUCgCAGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 118708 | 0.69 | 0.794022 |
Target: 5'- uGGUCcugCUCAgcgUCgcgggcgggCACGGCGUCGCgCUCGc -3' miRNA: 3'- -CCAGa--GAGU---AG---------GUGUCGCAGCG-GAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 117247 | 0.77 | 0.355029 |
Target: 5'- gGGUCgggUCUCGUUCGCcGCG-CGCCUCGa -3' miRNA: 3'- -CCAG---AGAGUAGGUGuCGCaGCGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 115479 | 0.71 | 0.677274 |
Target: 5'- cGGUCgcgggCUCggCCGCGGCGgcgCGCCg-- -3' miRNA: 3'- -CCAGa----GAGuaGGUGUCGCa--GCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 109756 | 0.66 | 0.909258 |
Target: 5'- cGG-CUCcCggCCGCcGCGUCGCCgucUCGg -3' miRNA: 3'- -CCaGAGaGuaGGUGuCGCAGCGG---AGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 107893 | 0.66 | 0.920918 |
Target: 5'- cGGcCcgCUUGUCCGCGGCcgcgGCCUCGg -3' miRNA: 3'- -CCaGa-GAGUAGGUGUCGcag-CGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 104484 | 0.7 | 0.747038 |
Target: 5'- -cUCcagCUCGUCCACGGCGUCGUg--- -3' miRNA: 3'- ccAGa--GAGUAGGUGUCGCAGCGgagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 100901 | 0.67 | 0.876023 |
Target: 5'- cGGcCUCgccgcgCAccgCCGCgAGCGUCGCCUg- -3' miRNA: 3'- -CCaGAGa-----GUa--GGUG-UCGCAGCGGAgc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 99615 | 0.67 | 0.868703 |
Target: 5'- -----gUCGUCCACAGCGcCGCCa-- -3' miRNA: 3'- ccagagAGUAGGUGUCGCaGCGGagc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 93928 | 0.67 | 0.890003 |
Target: 5'- cGGgCUUgcgcCGUCCGCgGGCGcCGCCUCc -3' miRNA: 3'- -CCaGAGa---GUAGGUG-UCGCaGCGGAGc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 91120 | 0.67 | 0.883125 |
Target: 5'- cGUCUCgcgCG-CCGCGGcCGagGCCUCa -3' miRNA: 3'- cCAGAGa--GUaGGUGUC-GCagCGGAGc -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 83609 | 0.67 | 0.903073 |
Target: 5'- --gCUCUCcgCCGCGGCGUgGUCcagCGc -3' miRNA: 3'- ccaGAGAGuaGGUGUCGCAgCGGa--GC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 80455 | 0.75 | 0.486284 |
Target: 5'- cGG-CUCUCGUCgCGCAGCaucucGUCcGCCUCGc -3' miRNA: 3'- -CCaGAGAGUAG-GUGUCG-----CAG-CGGAGC- -5' |
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23673 | 3' | -55.3 | NC_005261.1 | + | 68353 | 0.66 | 0.909258 |
Target: 5'- uGGcCgagugCUUcguGUCgCuCGGCGUCGCCUCGg -3' miRNA: 3'- -CCaGa----GAG---UAG-GuGUCGCAGCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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