miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23673 3' -55.3 NC_005261.1 + 13849 0.74 0.505525
Target:  5'- cGUCUcCUCGUCgC-CGGCGUCGCCggCGg -3'
miRNA:   3'- cCAGA-GAGUAG-GuGUCGCAGCGGa-GC- -5'
23673 3' -55.3 NC_005261.1 + 115479 0.71 0.677274
Target:  5'- cGGUCgcgggCUCggCCGCGGCGgcgCGCCg-- -3'
miRNA:   3'- -CCAGa----GAGuaGGUGUCGCa--GCGGagc -5'
23673 3' -55.3 NC_005261.1 + 28301 0.71 0.687424
Target:  5'- cGUCUCcuUCGUUCGCGGCGcccgCGCuCUCGc -3'
miRNA:   3'- cCAGAG--AGUAGGUGUCGCa---GCG-GAGC- -5'
23673 3' -55.3 NC_005261.1 + 122510 0.71 0.697527
Target:  5'- cGGgCUCUCAaCCAUGGgGUCGCCa-- -3'
miRNA:   3'- -CCaGAGAGUaGGUGUCgCAGCGGagc -5'
23673 3' -55.3 NC_005261.1 + 104484 0.7 0.747038
Target:  5'- -cUCcagCUCGUCCACGGCGUCGUg--- -3'
miRNA:   3'- ccAGa--GAGUAGGUGUCGCAGCGgagc -5'
23673 3' -55.3 NC_005261.1 + 118708 0.69 0.794022
Target:  5'- uGGUCcugCUCAgcgUCgcgggcgggCACGGCGUCGCgCUCGc -3'
miRNA:   3'- -CCAGa--GAGU---AG---------GUGUCGCAGCG-GAGC- -5'
23673 3' -55.3 NC_005261.1 + 125326 0.69 0.794022
Target:  5'- cGGcCUCggCGUCCGCAGCG-CGCagggCGu -3'
miRNA:   3'- -CCaGAGa-GUAGGUGUCGCaGCGga--GC- -5'
23673 3' -55.3 NC_005261.1 + 124845 0.68 0.837353
Target:  5'- aGGUC-CUCgcgcagGUCUGCGGCGUCGUCg-- -3'
miRNA:   3'- -CCAGaGAG------UAGGUGUCGCAGCGGagc -5'
23673 3' -55.3 NC_005261.1 + 124743 0.68 0.845489
Target:  5'- --cCUCUCcccgcagCCGCAGCGgcCGCCUCc -3'
miRNA:   3'- ccaGAGAGua-----GGUGUCGCa-GCGGAGc -5'
23673 3' -55.3 NC_005261.1 + 12790 0.68 0.85343
Target:  5'- cGUCggcgagCUCGUCguCGGCGUCGCUg-- -3'
miRNA:   3'- cCAGa-----GAGUAGguGUCGCAGCGGagc -5'
23673 3' -55.3 NC_005261.1 + 99615 0.67 0.868703
Target:  5'- -----gUCGUCCACAGCGcCGCCa-- -3'
miRNA:   3'- ccagagAGUAGGUGUCGCaGCGGagc -5'
23673 3' -55.3 NC_005261.1 + 4881 0.66 0.936611
Target:  5'- cGGcCgcCUCAgCCGCGGC--CGCCUCGg -3'
miRNA:   3'- -CCaGa-GAGUaGGUGUCGcaGCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.