Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23675 | 5' | -60.5 | NC_005261.1 | + | 28049 | 0.79 | 0.126233 |
Target: 5'- aGCUUCUcCCCCUCUCCCUC-CUCgUUg -3' miRNA: 3'- aCGAGGA-GGGGAGAGGGAGaGAGgAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 28325 | 0.69 | 0.483741 |
Target: 5'- cGCUCucgCUCUCC-CUCCCUCcCUcCCUCc -3' miRNA: 3'- aCGAG---GAGGGGaGAGGGAGaGA-GGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 28395 | 0.73 | 0.303606 |
Target: 5'- cGCcUCUCCCCUaccCCCUC-CUCCUCc -3' miRNA: 3'- aCGaGGAGGGGAga-GGGAGaGAGGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 33212 | 0.8 | 0.105411 |
Target: 5'- -cCUCCcCCCCUCUCCCUCccccucccuccUCUCCUCc -3' miRNA: 3'- acGAGGaGGGGAGAGGGAG-----------AGAGGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 52093 | 0.67 | 0.580856 |
Target: 5'- -cCUCCcCCCUUCcCCCcCUCUCCUg -3' miRNA: 3'- acGAGGaGGGGAGaGGGaGAGAGGAg -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 76830 | 0.69 | 0.493136 |
Target: 5'- aGCaacuaCCUgCCCUCgUCUCgCUCUCCUCg -3' miRNA: 3'- aCGa----GGAgGGGAG-AGGGaGAGAGGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 77862 | 0.69 | 0.51217 |
Target: 5'- gGCUCCacaCgCCCUCUCCaggCUCgcguccgccgUCUCCUCg -3' miRNA: 3'- aCGAGGa--G-GGGAGAGG---GAG----------AGAGGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 83970 | 0.74 | 0.26434 |
Target: 5'- cGCUUCUcCCCCUCUCCCcccCUUUCCc- -3' miRNA: 3'- aCGAGGA-GGGGAGAGGGa--GAGAGGag -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 120756 | 0.67 | 0.580856 |
Target: 5'- -cUUCCUuuUCCCUCcCCCUCUUUCCa- -3' miRNA: 3'- acGAGGA--GGGGAGaGGGAGAGAGGag -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 120785 | 0.72 | 0.317656 |
Target: 5'- ---gCCUCCCUUCUCCUUCUcCUCCa- -3' miRNA: 3'- acgaGGAGGGGAGAGGGAGA-GAGGag -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 124726 | 0.66 | 0.6613 |
Target: 5'- aGCUCCUCCaCCacgCUCC-UCUCcCCg- -3' miRNA: 3'- aCGAGGAGG-GGa--GAGGgAGAGaGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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