Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23675 | 5' | -60.5 | NC_005261.1 | + | 28049 | 0.79 | 0.126233 |
Target: 5'- aGCUUCUcCCCCUCUCCCUC-CUCgUUg -3' miRNA: 3'- aCGAGGA-GGGGAGAGGGAGaGAGgAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 22299 | 0.76 | 0.193456 |
Target: 5'- cGCccgCCUCCuCCUCUCUCUCUUUCCcCg -3' miRNA: 3'- aCGa--GGAGG-GGAGAGGGAGAGAGGaG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 25713 | 0.74 | 0.246302 |
Target: 5'- cGCUCaagccCCCCUCUCCCccCUCUCC-Ca -3' miRNA: 3'- aCGAGga---GGGGAGAGGGa-GAGAGGaG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 5684 | 0.74 | 0.258211 |
Target: 5'- aGCUCCcUCCC-CUCCCUCUcCUCCcCg -3' miRNA: 3'- aCGAGGaGGGGaGAGGGAGA-GAGGaG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 83970 | 0.74 | 0.26434 |
Target: 5'- cGCUUCUcCCCCUCUCCCcccCUUUCCc- -3' miRNA: 3'- aCGAGGA-GGGGAGAGGGa--GAGAGGag -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 10065 | 0.74 | 0.270587 |
Target: 5'- -uCUCCUCCCCUCUCCCU---UCCa- -3' miRNA: 3'- acGAGGAGGGGAGAGGGAgagAGGag -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 6912 | 0.73 | 0.283436 |
Target: 5'- gGUUCC-CCCCuccugcUCUCCUUCUCaUCCUCc -3' miRNA: 3'- aCGAGGaGGGG------AGAGGGAGAG-AGGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 6945 | 0.73 | 0.283436 |
Target: 5'- gGCUCCUCCUCUCUgCCUUUUUUUUa -3' miRNA: 3'- aCGAGGAGGGGAGAgGGAGAGAGGAg -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 28395 | 0.73 | 0.303606 |
Target: 5'- cGCcUCUCCCCUaccCCCUC-CUCCUCc -3' miRNA: 3'- aCGaGGAGGGGAga-GGGAGaGAGGAG- -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 120785 | 0.72 | 0.317656 |
Target: 5'- ---gCCUCCCUUCUCCUUCUcCUCCa- -3' miRNA: 3'- acgaGGAGGGGAGAGGGAGA-GAGGag -5' |
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23675 | 5' | -60.5 | NC_005261.1 | + | 7687 | 0.66 | 0.681337 |
Target: 5'- gUGUUCUUCUUCUucugcauucuugCUCUCUCUCUCC-Cg -3' miRNA: 3'- -ACGAGGAGGGGA------------GAGGGAGAGAGGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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