miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 97569 0.66 0.979073
Target:  5'- cCCGggguuggcucgGUGGCgCGGGCGGAGcgggcGGAGCgGg -3'
miRNA:   3'- -GGCa----------UACCG-GCUCGUCUUu----CUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 83857 0.66 0.979073
Target:  5'- cCCGcugGGCUGGGCcGGGccGGAcGCCGg -3'
miRNA:   3'- -GGCauaCCGGCUCGuCUU--UCUuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 15649 0.66 0.979073
Target:  5'- gCCGcccGGCCGGGagcuggugcucCAGGAAGAucAGCCu -3'
miRNA:   3'- -GGCauaCCGGCUC-----------GUCUUUCU--UCGGc -5'
23678 3' -52.6 NC_005261.1 + 117774 0.66 0.979073
Target:  5'- uCCGgaucgGGgCGGGgAGGAGGGAGgCGa -3'
miRNA:   3'- -GGCaua--CCgGCUCgUCUUUCUUCgGC- -5'
23678 3' -52.6 NC_005261.1 + 15395 0.67 0.95788
Target:  5'- gCCGUcgauGCCGAcgcGCAGAAAGuaGAGCCc -3'
miRNA:   3'- -GGCAuac-CGGCU---CGUCUUUC--UUCGGc -5'
23678 3' -52.6 NC_005261.1 + 27368 0.67 0.949798
Target:  5'- aCCGgcgcgaGGCCGgugGGCAGggGGuacgcGGCCa -3'
miRNA:   3'- -GGCaua---CCGGC---UCGUCuuUCu----UCGGc -5'
23678 3' -52.6 NC_005261.1 + 22208 0.67 0.949798
Target:  5'- --uUcgGGCCGA--GGGAAGAAGCCu -3'
miRNA:   3'- ggcAuaCCGGCUcgUCUUUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 121557 0.67 0.949798
Target:  5'- gCCGUccucGGCgaaGGGCGGGGAcGAGGCCu -3'
miRNA:   3'- -GGCAua--CCGg--CUCGUCUUU-CUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 126691 0.67 0.949798
Target:  5'- uCCGa--GGCCGGcgguGCGGGAAGcGGCUGg -3'
miRNA:   3'- -GGCauaCCGGCU----CGUCUUUCuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 53583 0.67 0.961566
Target:  5'- gCCGcg-GGCCGgcggcgccccAGCGGAccGAcGAGGCCGu -3'
miRNA:   3'- -GGCauaCCGGC----------UCGUCU--UU-CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 38937 0.67 0.961566
Target:  5'- gCCGgc-GGCCGGGCGGGccGcGGCgCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGUCUuuCuUCG-GC- -5'
23678 3' -52.6 NC_005261.1 + 103598 0.67 0.953958
Target:  5'- gCCGccGUGGCCGcggcGGCAGcgcGGGAGGCgGc -3'
miRNA:   3'- -GGCa-UACCGGC----UCGUCu--UUCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 5848 0.67 0.959382
Target:  5'- aCGgc-GGCCGAgagaggggucucgacGaCGGAGAGAGGCUGg -3'
miRNA:   3'- gGCauaCCGGCU---------------C-GUCUUUCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 6415 0.67 0.960484
Target:  5'- gCGU-UGGCCcggccugcucgcgaGGGCGGuccGGggGCCGg -3'
miRNA:   3'- gGCAuACCGG--------------CUCGUCuu-UCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121497 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121434 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 136057 0.67 0.965022
Target:  5'- aCCGgc-GGgCGGGCAGGGAGAacaaAGgCGa -3'
miRNA:   3'- -GGCauaCCgGCUCGUCUUUCU----UCgGC- -5'
23678 3' -52.6 NC_005261.1 + 82971 0.67 0.965022
Target:  5'- aCGUGgugcGcGUCGAGCAcGGAGGcGGCCGc -3'
miRNA:   3'- gGCAUa---C-CGGCUCGU-CUUUCuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 32061 0.67 0.959382
Target:  5'- ---cAUGGCCGcGCAGAgcGcggcgcuggggcucgGGGAGCCGg -3'
miRNA:   3'- ggcaUACCGGCuCGUCU--U---------------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 967 0.67 0.95788
Target:  5'- cCCGUAgagcggcgGGCCGcgcGCAGAgcgGAGGAGaCGg -3'
miRNA:   3'- -GGCAUa-------CCGGCu--CGUCU---UUCUUCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.