miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 72196 0.7 0.883439
Target:  5'- gCGgc-GGCCGcgcgcGGCAGAAAGAacauggugucccgccGGCCGg -3'
miRNA:   3'- gGCauaCCGGC-----UCGUCUUUCU---------------UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 98488 0.69 0.887682
Target:  5'- uCCGcg-GGCuCGGGCGGGuAAGguGCCGg -3'
miRNA:   3'- -GGCauaCCG-GCUCGUCU-UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 15311 0.69 0.887682
Target:  5'- gUCGUcgGaGCCGGGCccGucGAAGCCGu -3'
miRNA:   3'- -GGCAuaC-CGGCUCGucUuuCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 49480 0.69 0.894564
Target:  5'- -----aGGCCGcGCGGAAgcugcagcagaGGAGGCCGg -3'
miRNA:   3'- ggcauaCCGGCuCGUCUU-----------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 125367 0.69 0.894564
Target:  5'- ------cGCCGGGCAGAGGGgcGCUGg -3'
miRNA:   3'- ggcauacCGGCUCGUCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 13695 0.69 0.901204
Target:  5'- gCGUggGGCgGGGCGGGcuGGggGCgGg -3'
miRNA:   3'- gGCAuaCCGgCUCGUCUu-UCuuCGgC- -5'
23678 3' -52.6 NC_005261.1 + 24546 0.69 0.907601
Target:  5'- aCGUAccUGGCCGGGCGGcgccAGGucccAGCCc -3'
miRNA:   3'- gGCAU--ACCGGCUCGUCuu--UCU----UCGGc -5'
23678 3' -52.6 NC_005261.1 + 115562 0.69 0.91375
Target:  5'- uCCGUGUGGCagcacaCGAacGCGGcGAGGAacuGGCCGu -3'
miRNA:   3'- -GGCAUACCG------GCU--CGUC-UUUCU---UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 16180 0.69 0.91375
Target:  5'- gCGggcGUGGCgGGGguGGGcGGggGCCGc -3'
miRNA:   3'- gGCa--UACCGgCUCguCUU-UCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 70874 0.69 0.91375
Target:  5'- gCCGUggcGUGGCCG-GCGGugcacauGGCCGu -3'
miRNA:   3'- -GGCA---UACCGGCuCGUCuuucu--UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 60039 0.69 0.91375
Target:  5'- gCCGUcgGcGCCGAcggcgGCGGcGAAGAgcggcGGCCGg -3'
miRNA:   3'- -GGCAuaC-CGGCU-----CGUC-UUUCU-----UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 30828 0.69 0.91375
Target:  5'- cCCGgggacggGGCCGAGgAGGAGGAGGa-- -3'
miRNA:   3'- -GGCaua----CCGGCUCgUCUUUCUUCggc -5'
23678 3' -52.6 NC_005261.1 + 92225 0.69 0.91965
Target:  5'- gUCGUcgGccccGCCGAGCgcgcGGAuGGAGGCCa -3'
miRNA:   3'- -GGCAuaC----CGGCUCG----UCUuUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 28630 0.68 0.9253
Target:  5'- gCGcaugGUGGCCGcGGgGGAGAgugacGAGGCCGg -3'
miRNA:   3'- gGCa---UACCGGC-UCgUCUUU-----CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 78522 0.68 0.929106
Target:  5'- -----aGGCgCGAGCGGAGgcggcgaggggaagGGGAGCCGc -3'
miRNA:   3'- ggcauaCCG-GCUCGUCUU--------------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121192 0.68 0.930699
Target:  5'- gCCGg--GGCCGGGCcc---GggGCCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGucuuuCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 133216 0.68 0.930699
Target:  5'- gCCGUcgaGGCCGAGCu----GggGCCc -3'
miRNA:   3'- -GGCAua-CCGGCUCGucuuuCuuCGGc -5'
23678 3' -52.6 NC_005261.1 + 100186 0.68 0.935847
Target:  5'- gCCGUGgcGGCgGGGCAGcguGGcGGCCa -3'
miRNA:   3'- -GGCAUa-CCGgCUCGUCuu-UCuUCGGc -5'
23678 3' -52.6 NC_005261.1 + 48319 0.68 0.935847
Target:  5'- gCGUcgGGcCCGGGCucGGggGcgcgcgcggcGAGGCCGa -3'
miRNA:   3'- gGCAuaCC-GGCUCG--UCuuU----------CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 2785 0.68 0.940745
Target:  5'- cCCGaggGGCUGccgccGGCGGccgGGAGggGCCGg -3'
miRNA:   3'- -GGCauaCCGGC-----UCGUC---UUUCuuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.