miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 28800 0.66 0.968255
Target:  5'- -----cGGCCGcGGCGGAGGcagccgccgccGAAGCCGa -3'
miRNA:   3'- ggcauaCCGGC-UCGUCUUU-----------CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 9616 0.66 0.968255
Target:  5'- cCCGggGUGGgCaGGCGGGGguGGggGCUGg -3'
miRNA:   3'- -GGCa-UACCgGcUCGUCUU--UCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 22971 0.66 0.968255
Target:  5'- -----aGGCCGAGgacCGGGAGGAGGCgGc -3'
miRNA:   3'- ggcauaCCGGCUC---GUCUUUCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 63725 0.66 0.967941
Target:  5'- uCCGUgagcggcgugcgcAUGGCCGcGGCGGcguAGGccGCCGu -3'
miRNA:   3'- -GGCA-------------UACCGGC-UCGUCu--UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 136057 0.67 0.965022
Target:  5'- aCCGgc-GGgCGGGCAGGGAGAacaaAGgCGa -3'
miRNA:   3'- -GGCauaCCgGCUCGUCUUUCU----UCgGC- -5'
23678 3' -52.6 NC_005261.1 + 121497 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121434 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 82971 0.67 0.965022
Target:  5'- aCGUGgugcGcGUCGAGCAcGGAGGcGGCCGc -3'
miRNA:   3'- gGCAUa---C-CGGCUCGU-CUUUCuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 2607 0.67 0.965022
Target:  5'- gCCGUcgGcggcggggccGCCGGGCGGcauGggGCCc -3'
miRNA:   3'- -GGCAuaC----------CGGCUCGUCuuuCuuCGGc -5'
23678 3' -52.6 NC_005261.1 + 53583 0.67 0.961566
Target:  5'- gCCGcg-GGCCGgcggcgccccAGCGGAccGAcGAGGCCGu -3'
miRNA:   3'- -GGCauaCCGGC----------UCGUCU--UU-CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 38937 0.67 0.961566
Target:  5'- gCCGgc-GGCCGGGCGGGccGcGGCgCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGUCUuuCuUCG-GC- -5'
23678 3' -52.6 NC_005261.1 + 58298 0.67 0.961566
Target:  5'- gCCGgggGGCgCGGGgAGggGGcGGCCc -3'
miRNA:   3'- -GGCauaCCG-GCUCgUCuuUCuUCGGc -5'
23678 3' -52.6 NC_005261.1 + 6415 0.67 0.960484
Target:  5'- gCGU-UGGCCcggccugcucgcgaGGGCGGuccGGggGCCGg -3'
miRNA:   3'- gGCAuACCGG--------------CUCGUCuu-UCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 5848 0.67 0.959382
Target:  5'- aCGgc-GGCCGAgagaggggucucgacGaCGGAGAGAGGCUGg -3'
miRNA:   3'- gGCauaCCGGCU---------------C-GUCUUUCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 32061 0.67 0.959382
Target:  5'- ---cAUGGCCGcGCAGAgcGcggcgcuggggcucgGGGAGCCGg -3'
miRNA:   3'- ggcaUACCGGCuCGUCU--U---------------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 15395 0.67 0.95788
Target:  5'- gCCGUcgauGCCGAcgcGCAGAAAGuaGAGCCc -3'
miRNA:   3'- -GGCAuac-CGGCU---CGUCUUUC--UUCGGc -5'
23678 3' -52.6 NC_005261.1 + 27817 0.67 0.95788
Target:  5'- gCCGgccGGCCGAGCuAGccAGccGAGCCa -3'
miRNA:   3'- -GGCauaCCGGCUCG-UCuuUC--UUCGGc -5'
23678 3' -52.6 NC_005261.1 + 128888 0.67 0.95788
Target:  5'- gCGgg-GGCCGGGUGGGAGGcGGgCGu -3'
miRNA:   3'- gGCauaCCGGCUCGUCUUUCuUCgGC- -5'
23678 3' -52.6 NC_005261.1 + 967 0.67 0.95788
Target:  5'- cCCGUAgagcggcgGGCCGcgcGCAGAgcgGAGGAGaCGg -3'
miRNA:   3'- -GGCAUa-------CCGGCu--CGUCU---UUCUUCgGC- -5'
23678 3' -52.6 NC_005261.1 + 129698 0.67 0.95788
Target:  5'- gCCGg--GGCCgGGGCcGGAGGcAGGCCc -3'
miRNA:   3'- -GGCauaCCGG-CUCGuCUUUC-UUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.