miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 15395 0.67 0.95788
Target:  5'- gCCGUcgauGCCGAcgcGCAGAAAGuaGAGCCc -3'
miRNA:   3'- -GGCAuac-CGGCU---CGUCUUUC--UUCGGc -5'
23678 3' -52.6 NC_005261.1 + 27724 0.67 0.953958
Target:  5'- gCCGcg-GGagGAGCGGAgacgcgcgggcaGAGGAGCCGa -3'
miRNA:   3'- -GGCauaCCggCUCGUCU------------UUCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 103598 0.67 0.953958
Target:  5'- gCCGccGUGGCCGcggcGGCAGcgcGGGAGGCgGc -3'
miRNA:   3'- -GGCa-UACCGGC----UCGUCu--UUCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 27368 0.67 0.949798
Target:  5'- aCCGgcgcgaGGCCGgugGGCAGggGGuacgcGGCCa -3'
miRNA:   3'- -GGCaua---CCGGC---UCGUCuuUCu----UCGGc -5'
23678 3' -52.6 NC_005261.1 + 22208 0.67 0.949798
Target:  5'- --uUcgGGCCGA--GGGAAGAAGCCu -3'
miRNA:   3'- ggcAuaCCGGCUcgUCUUUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 64207 0.67 0.949798
Target:  5'- aCCGgc--GCCGGGUAGAAGaAGGCCc -3'
miRNA:   3'- -GGCauacCGGCUCGUCUUUcUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 121557 0.67 0.949798
Target:  5'- gCCGUccucGGCgaaGGGCGGGGAcGAGGCCu -3'
miRNA:   3'- -GGCAua--CCGg--CUCGUCUUU-CUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 126691 0.67 0.949798
Target:  5'- uCCGa--GGCCGGcgguGCGGGAAGcGGCUGg -3'
miRNA:   3'- -GGCauaCCGGCU----CGUCUUUCuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 86552 0.68 0.945395
Target:  5'- aCGUAgggGGCgGcgauuuGGUAGAAgcgguGGAAGCCGg -3'
miRNA:   3'- gGCAUa--CCGgC------UCGUCUU-----UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 62488 0.68 0.942634
Target:  5'- cCCGUugcagaGGUCGAacgggcccguguucuGCAGGAAGgcGCCGc -3'
miRNA:   3'- -GGCAua----CCGGCU---------------CGUCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 130168 0.68 0.940745
Target:  5'- aCCGUcagcgGcGCCG-GCAGcAGGGAGCUGa -3'
miRNA:   3'- -GGCAua---C-CGGCuCGUCuUUCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 127332 0.68 0.940745
Target:  5'- cCCGcgggGGCCgGAGCGGcgGGgcGCUGg -3'
miRNA:   3'- -GGCaua-CCGG-CUCGUCuuUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 101676 0.68 0.940745
Target:  5'- cUCGUA-GGCCGAGCcGGc-GAAGCgGg -3'
miRNA:   3'- -GGCAUaCCGGCUCGuCUuuCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 2785 0.68 0.940745
Target:  5'- cCCGaggGGCUGccgccGGCGGccgGGAGggGCCGg -3'
miRNA:   3'- -GGCauaCCGGC-----UCGUC---UUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 48319 0.68 0.935847
Target:  5'- gCGUcgGGcCCGGGCucGGggGcgcgcgcggcGAGGCCGa -3'
miRNA:   3'- gGCAuaCC-GGCUCG--UCuuU----------CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 100186 0.68 0.935847
Target:  5'- gCCGUGgcGGCgGGGCAGcguGGcGGCCa -3'
miRNA:   3'- -GGCAUa-CCGgCUCGUCuu-UCuUCGGc -5'
23678 3' -52.6 NC_005261.1 + 133216 0.68 0.930699
Target:  5'- gCCGUcgaGGCCGAGCu----GggGCCc -3'
miRNA:   3'- -GGCAua-CCGGCUCGucuuuCuuCGGc -5'
23678 3' -52.6 NC_005261.1 + 121192 0.68 0.930699
Target:  5'- gCCGg--GGCCGGGCcc---GggGCCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGucuuuCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 78522 0.68 0.929106
Target:  5'- -----aGGCgCGAGCGGAGgcggcgaggggaagGGGAGCCGc -3'
miRNA:   3'- ggcauaCCG-GCUCGUCUU--------------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 28630 0.68 0.9253
Target:  5'- gCGcaugGUGGCCGcGGgGGAGAgugacGAGGCCGg -3'
miRNA:   3'- gGCa---UACCGGC-UCgUCUUU-----CUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.