miRNA display CGI


Results 61 - 80 of 93 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 92225 0.69 0.91965
Target:  5'- gUCGUcgGccccGCCGAGCgcgcGGAuGGAGGCCa -3'
miRNA:   3'- -GGCAuaC----CGGCUCG----UCUuUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 16180 0.69 0.91375
Target:  5'- gCGggcGUGGCgGGGguGGGcGGggGCCGc -3'
miRNA:   3'- gGCa--UACCGgCUCguCUU-UCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 60039 0.69 0.91375
Target:  5'- gCCGUcgGcGCCGAcggcgGCGGcGAAGAgcggcGGCCGg -3'
miRNA:   3'- -GGCAuaC-CGGCU-----CGUC-UUUCU-----UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 30828 0.69 0.91375
Target:  5'- cCCGgggacggGGCCGAGgAGGAGGAGGa-- -3'
miRNA:   3'- -GGCaua----CCGGCUCgUCUUUCUUCggc -5'
23678 3' -52.6 NC_005261.1 + 115562 0.69 0.91375
Target:  5'- uCCGUGUGGCagcacaCGAacGCGGcGAGGAacuGGCCGu -3'
miRNA:   3'- -GGCAUACCG------GCU--CGUC-UUUCU---UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 70874 0.69 0.91375
Target:  5'- gCCGUggcGUGGCCG-GCGGugcacauGGCCGu -3'
miRNA:   3'- -GGCA---UACCGGCuCGUCuuucu--UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 24546 0.69 0.907601
Target:  5'- aCGUAccUGGCCGGGCGGcgccAGGucccAGCCc -3'
miRNA:   3'- gGCAU--ACCGGCUCGUCuu--UCU----UCGGc -5'
23678 3' -52.6 NC_005261.1 + 13695 0.69 0.901204
Target:  5'- gCGUggGGCgGGGCGGGcuGGggGCgGg -3'
miRNA:   3'- gGCAuaCCGgCUCGUCUu-UCuuCGgC- -5'
23678 3' -52.6 NC_005261.1 + 49480 0.69 0.894564
Target:  5'- -----aGGCCGcGCGGAAgcugcagcagaGGAGGCCGg -3'
miRNA:   3'- ggcauaCCGGCuCGUCUU-----------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 125367 0.69 0.894564
Target:  5'- ------cGCCGGGCAGAGGGgcGCUGg -3'
miRNA:   3'- ggcauacCGGCUCGUCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 15311 0.69 0.887682
Target:  5'- gUCGUcgGaGCCGGGCccGucGAAGCCGu -3'
miRNA:   3'- -GGCAuaC-CGGCUCGucUuuCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 98488 0.69 0.887682
Target:  5'- uCCGcg-GGCuCGGGCGGGuAAGguGCCGg -3'
miRNA:   3'- -GGCauaCCG-GCUCGUCU-UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 72196 0.7 0.883439
Target:  5'- gCGgc-GGCCGcgcgcGGCAGAAAGAacauggugucccgccGGCCGg -3'
miRNA:   3'- gGCauaCCGGC-----UCGUCUUUCU---------------UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 21160 0.7 0.880564
Target:  5'- aCGgcccuGCCGAGCAGAGAuGcAGCCGc -3'
miRNA:   3'- gGCauac-CGGCUCGUCUUU-CuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 94697 0.7 0.873214
Target:  5'- aCCGaggacGUGGCCGAGCu---GGAGcGCCGc -3'
miRNA:   3'- -GGCa----UACCGGCUCGucuuUCUU-CGGC- -5'
23678 3' -52.6 NC_005261.1 + 74406 0.7 0.865637
Target:  5'- cCCGUuuucGGCCGcgGGCGGGAG--GGCCGa -3'
miRNA:   3'- -GGCAua--CCGGC--UCGUCUUUcuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 127021 0.7 0.85784
Target:  5'- gCGgc-GGcCCGAGCAGGGAGucGUCGa -3'
miRNA:   3'- gGCauaCC-GGCUCGUCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 83033 0.7 0.85784
Target:  5'- cCCGggagGGCCGcucgccGCGGGAGGggGCUc -3'
miRNA:   3'- -GGCaua-CCGGCu-----CGUCUUUCuuCGGc -5'
23678 3' -52.6 NC_005261.1 + 119976 0.7 0.85784
Target:  5'- uCCGUcgagccccGGCCGAcGCuGGAGGgcGCCGg -3'
miRNA:   3'- -GGCAua------CCGGCU-CGuCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 34319 0.7 0.849828
Target:  5'- aCGgggaGGCCGAGgGGccccAAGggGCCGg -3'
miRNA:   3'- gGCaua-CCGGCUCgUCu---UUCuuCGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.