Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23678 | 3' | -52.6 | NC_005261.1 | + | 62637 | 0.67 | 0.95788 |
Target: 5'- gCGUGUccGGCgCGAcGCcguugaccgAGAAGGAGGCCa -3' miRNA: 3'- gGCAUA--CCG-GCU-CG---------UCUUUCUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 63725 | 0.66 | 0.967941 |
Target: 5'- uCCGUgagcggcgugcgcAUGGCCGcGGCGGcguAGGccGCCGu -3' miRNA: 3'- -GGCA-------------UACCGGC-UCGUCu--UUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 64207 | 0.67 | 0.949798 |
Target: 5'- aCCGgc--GCCGGGUAGAAGaAGGCCc -3' miRNA: 3'- -GGCauacCGGCUCGUCUUUcUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 68733 | 0.66 | 0.971269 |
Target: 5'- gCGg--GcGCCG-GCGGGAAGAAGCg- -3' miRNA: 3'- gGCauaC-CGGCuCGUCUUUCUUCGgc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 70874 | 0.69 | 0.91375 |
Target: 5'- gCCGUggcGUGGCCG-GCGGugcacauGGCCGu -3' miRNA: 3'- -GGCA---UACCGGCuCGUCuuucu--UCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 71620 | 0.66 | 0.968255 |
Target: 5'- cCCGggcgcgGGcCCGGGCGGcgGGAAaacGCCGc -3' miRNA: 3'- -GGCaua---CC-GGCUCGUCuuUCUU---CGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 72196 | 0.7 | 0.883439 |
Target: 5'- gCGgc-GGCCGcgcgcGGCAGAAAGAacauggugucccgccGGCCGg -3' miRNA: 3'- gGCauaCCGGC-----UCGUCUUUCU---------------UCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 74343 | 0.66 | 0.968255 |
Target: 5'- aCCGca-GGCgCGgcGGCGGAAGGGgcGGCCGc -3' miRNA: 3'- -GGCauaCCG-GC--UCGUCUUUCU--UCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 74406 | 0.7 | 0.865637 |
Target: 5'- cCCGUuuucGGCCGcgGGCGGGAG--GGCCGa -3' miRNA: 3'- -GGCAua--CCGGC--UCGUCUUUcuUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 74855 | 0.66 | 0.97667 |
Target: 5'- gCGgcgcGCCGGGCGGA-GGAGGCgGa -3' miRNA: 3'- gGCauacCGGCUCGUCUuUCUUCGgC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 74907 | 0.66 | 0.979073 |
Target: 5'- cCCGcgcUGGCCGcGCGG-GGGAGGgCGa -3' miRNA: 3'- -GGCau-ACCGGCuCGUCuUUCUUCgGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 75824 | 0.66 | 0.97667 |
Target: 5'- cCCGgcgcGGCCGcGCccGGGGAGggGCgCGc -3' miRNA: 3'- -GGCaua-CCGGCuCG--UCUUUCuuCG-GC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 77218 | 0.75 | 0.594864 |
Target: 5'- cCCGc-UGGCCGGG-GGGGAGGAGCCa -3' miRNA: 3'- -GGCauACCGGCUCgUCUUUCUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 78522 | 0.68 | 0.929106 |
Target: 5'- -----aGGCgCGAGCGGAGgcggcgaggggaagGGGAGCCGc -3' miRNA: 3'- ggcauaCCG-GCUCGUCUU--------------UCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 81344 | 0.66 | 0.97667 |
Target: 5'- gCCGUc-GGCgGGGCGGGggcuugcggGGGgcGCCGg -3' miRNA: 3'- -GGCAuaCCGgCUCGUCU---------UUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 82971 | 0.67 | 0.965022 |
Target: 5'- aCGUGgugcGcGUCGAGCAcGGAGGcGGCCGc -3' miRNA: 3'- gGCAUa---C-CGGCUCGU-CUUUCuUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 83033 | 0.7 | 0.85784 |
Target: 5'- cCCGggagGGCCGcucgccGCGGGAGGggGCUc -3' miRNA: 3'- -GGCaua-CCGGCu-----CGUCUUUCuuCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 83857 | 0.66 | 0.979073 |
Target: 5'- cCCGcugGGCUGGGCcGGGccGGAcGCCGg -3' miRNA: 3'- -GGCauaCCGGCUCGuCUU--UCUuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 86552 | 0.68 | 0.945395 |
Target: 5'- aCGUAgggGGCgGcgauuuGGUAGAAgcgguGGAAGCCGg -3' miRNA: 3'- gGCAUa--CCGgC------UCGUCUU-----UCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 87877 | 0.66 | 0.976419 |
Target: 5'- ---gGUGGCgGAgagaggcGCGGAGAGGgcgGGCCGg -3' miRNA: 3'- ggcaUACCGgCU-------CGUCUUUCU---UCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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