miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 62637 0.67 0.95788
Target:  5'- gCGUGUccGGCgCGAcGCcguugaccgAGAAGGAGGCCa -3'
miRNA:   3'- gGCAUA--CCG-GCU-CG---------UCUUUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 63725 0.66 0.967941
Target:  5'- uCCGUgagcggcgugcgcAUGGCCGcGGCGGcguAGGccGCCGu -3'
miRNA:   3'- -GGCA-------------UACCGGC-UCGUCu--UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 64207 0.67 0.949798
Target:  5'- aCCGgc--GCCGGGUAGAAGaAGGCCc -3'
miRNA:   3'- -GGCauacCGGCUCGUCUUUcUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 68733 0.66 0.971269
Target:  5'- gCGg--GcGCCG-GCGGGAAGAAGCg- -3'
miRNA:   3'- gGCauaC-CGGCuCGUCUUUCUUCGgc -5'
23678 3' -52.6 NC_005261.1 + 70874 0.69 0.91375
Target:  5'- gCCGUggcGUGGCCG-GCGGugcacauGGCCGu -3'
miRNA:   3'- -GGCA---UACCGGCuCGUCuuucu--UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 71620 0.66 0.968255
Target:  5'- cCCGggcgcgGGcCCGGGCGGcgGGAAaacGCCGc -3'
miRNA:   3'- -GGCaua---CC-GGCUCGUCuuUCUU---CGGC- -5'
23678 3' -52.6 NC_005261.1 + 72196 0.7 0.883439
Target:  5'- gCGgc-GGCCGcgcgcGGCAGAAAGAacauggugucccgccGGCCGg -3'
miRNA:   3'- gGCauaCCGGC-----UCGUCUUUCU---------------UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 74343 0.66 0.968255
Target:  5'- aCCGca-GGCgCGgcGGCGGAAGGGgcGGCCGc -3'
miRNA:   3'- -GGCauaCCG-GC--UCGUCUUUCU--UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 74406 0.7 0.865637
Target:  5'- cCCGUuuucGGCCGcgGGCGGGAG--GGCCGa -3'
miRNA:   3'- -GGCAua--CCGGC--UCGUCUUUcuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 74855 0.66 0.97667
Target:  5'- gCGgcgcGCCGGGCGGA-GGAGGCgGa -3'
miRNA:   3'- gGCauacCGGCUCGUCUuUCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 74907 0.66 0.979073
Target:  5'- cCCGcgcUGGCCGcGCGG-GGGAGGgCGa -3'
miRNA:   3'- -GGCau-ACCGGCuCGUCuUUCUUCgGC- -5'
23678 3' -52.6 NC_005261.1 + 75824 0.66 0.97667
Target:  5'- cCCGgcgcGGCCGcGCccGGGGAGggGCgCGc -3'
miRNA:   3'- -GGCaua-CCGGCuCG--UCUUUCuuCG-GC- -5'
23678 3' -52.6 NC_005261.1 + 77218 0.75 0.594864
Target:  5'- cCCGc-UGGCCGGG-GGGGAGGAGCCa -3'
miRNA:   3'- -GGCauACCGGCUCgUCUUUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 78522 0.68 0.929106
Target:  5'- -----aGGCgCGAGCGGAGgcggcgaggggaagGGGAGCCGc -3'
miRNA:   3'- ggcauaCCG-GCUCGUCUU--------------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 81344 0.66 0.97667
Target:  5'- gCCGUc-GGCgGGGCGGGggcuugcggGGGgcGCCGg -3'
miRNA:   3'- -GGCAuaCCGgCUCGUCU---------UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 82971 0.67 0.965022
Target:  5'- aCGUGgugcGcGUCGAGCAcGGAGGcGGCCGc -3'
miRNA:   3'- gGCAUa---C-CGGCUCGU-CUUUCuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 83033 0.7 0.85784
Target:  5'- cCCGggagGGCCGcucgccGCGGGAGGggGCUc -3'
miRNA:   3'- -GGCaua-CCGGCu-----CGUCUUUCuuCGGc -5'
23678 3' -52.6 NC_005261.1 + 83857 0.66 0.979073
Target:  5'- cCCGcugGGCUGGGCcGGGccGGAcGCCGg -3'
miRNA:   3'- -GGCauaCCGGCUCGuCUU--UCUuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 86552 0.68 0.945395
Target:  5'- aCGUAgggGGCgGcgauuuGGUAGAAgcgguGGAAGCCGg -3'
miRNA:   3'- gGCAUa--CCGgC------UCGUCUU-----UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 87877 0.66 0.976419
Target:  5'- ---gGUGGCgGAgagaggcGCGGAGAGGgcgGGCCGg -3'
miRNA:   3'- ggcaUACCGgCU-------CGUCUUUCU---UCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.