Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23678 | 3' | -52.6 | NC_005261.1 | + | 101676 | 0.68 | 0.940745 |
Target: 5'- cUCGUA-GGCCGAGCcGGc-GAAGCgGg -3' miRNA: 3'- -GGCAUaCCGGCUCGuCUuuCUUCGgC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 130168 | 0.68 | 0.940745 |
Target: 5'- aCCGUcagcgGcGCCG-GCAGcAGGGAGCUGa -3' miRNA: 3'- -GGCAua---C-CGGCuCGUCuUUCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 127332 | 0.68 | 0.940745 |
Target: 5'- cCCGcgggGGCCgGAGCGGcgGGgcGCUGg -3' miRNA: 3'- -GGCaua-CCGG-CUCGUCuuUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 62488 | 0.68 | 0.942634 |
Target: 5'- cCCGUugcagaGGUCGAacgggcccguguucuGCAGGAAGgcGCCGc -3' miRNA: 3'- -GGCAua----CCGGCU---------------CGUCUUUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 86552 | 0.68 | 0.945395 |
Target: 5'- aCGUAgggGGCgGcgauuuGGUAGAAgcgguGGAAGCCGg -3' miRNA: 3'- gGCAUa--CCGgC------UCGUCUU-----UCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 27368 | 0.67 | 0.949798 |
Target: 5'- aCCGgcgcgaGGCCGgugGGCAGggGGuacgcGGCCa -3' miRNA: 3'- -GGCaua---CCGGC---UCGUCuuUCu----UCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 126691 | 0.67 | 0.949798 |
Target: 5'- uCCGa--GGCCGGcgguGCGGGAAGcGGCUGg -3' miRNA: 3'- -GGCauaCCGGCU----CGUCUUUCuUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 121557 | 0.67 | 0.949798 |
Target: 5'- gCCGUccucGGCgaaGGGCGGGGAcGAGGCCu -3' miRNA: 3'- -GGCAua--CCGg--CUCGUCUUU-CUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 64207 | 0.67 | 0.949798 |
Target: 5'- aCCGgc--GCCGGGUAGAAGaAGGCCc -3' miRNA: 3'- -GGCauacCGGCUCGUCUUUcUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 22208 | 0.67 | 0.949798 |
Target: 5'- --uUcgGGCCGA--GGGAAGAAGCCu -3' miRNA: 3'- ggcAuaCCGGCUcgUCUUUCUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 27724 | 0.67 | 0.953958 |
Target: 5'- gCCGcg-GGagGAGCGGAgacgcgcgggcaGAGGAGCCGa -3' miRNA: 3'- -GGCauaCCggCUCGUCU------------UUCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 103598 | 0.67 | 0.953958 |
Target: 5'- gCCGccGUGGCCGcggcGGCAGcgcGGGAGGCgGc -3' miRNA: 3'- -GGCa-UACCGGC----UCGUCu--UUCUUCGgC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 15395 | 0.67 | 0.95788 |
Target: 5'- gCCGUcgauGCCGAcgcGCAGAAAGuaGAGCCc -3' miRNA: 3'- -GGCAuac-CGGCU---CGUCUUUC--UUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 27817 | 0.67 | 0.95788 |
Target: 5'- gCCGgccGGCCGAGCuAGccAGccGAGCCa -3' miRNA: 3'- -GGCauaCCGGCUCG-UCuuUC--UUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 128888 | 0.67 | 0.95788 |
Target: 5'- gCGgg-GGCCGGGUGGGAGGcGGgCGu -3' miRNA: 3'- gGCauaCCGGCUCGUCUUUCuUCgGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 129698 | 0.67 | 0.95788 |
Target: 5'- gCCGg--GGCCgGGGCcGGAGGcAGGCCc -3' miRNA: 3'- -GGCauaCCGG-CUCGuCUUUC-UUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 967 | 0.67 | 0.95788 |
Target: 5'- cCCGUAgagcggcgGGCCGcgcGCAGAgcgGAGGAGaCGg -3' miRNA: 3'- -GGCAUa-------CCGGCu--CGUCU---UUCUUCgGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 62637 | 0.67 | 0.95788 |
Target: 5'- gCGUGUccGGCgCGAcGCcguugaccgAGAAGGAGGCCa -3' miRNA: 3'- gGCAUA--CCG-GCU-CG---------UCUUUCUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 32061 | 0.67 | 0.959382 |
Target: 5'- ---cAUGGCCGcGCAGAgcGcggcgcuggggcucgGGGAGCCGg -3' miRNA: 3'- ggcaUACCGGCuCGUCU--U---------------UCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 5848 | 0.67 | 0.959382 |
Target: 5'- aCGgc-GGCCGAgagaggggucucgacGaCGGAGAGAGGCUGg -3' miRNA: 3'- gGCauaCCGGCU---------------C-GUCUUUCUUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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