Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23678 | 3' | -52.6 | NC_005261.1 | + | 2570 | 0.71 | 0.815785 |
Target: 5'- gCGUGUGGuacuccCCGGGCGGcacgcggcGGAAGCCGc -3' miRNA: 3'- gGCAUACC------GGCUCGUCuu------UCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 16395 | 0.71 | 0.82458 |
Target: 5'- gCCGUcgucGUcGCCGGGCGGugcgGGAGAGGCCc -3' miRNA: 3'- -GGCA----UAcCGGCUCGUC----UUUCUUCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 25163 | 0.71 | 0.840776 |
Target: 5'- cCCGgggcGGCCGAGCGGGuuGGAucacgugGGCCu -3' miRNA: 3'- -GGCaua-CCGGCUCGUCUu-UCU-------UCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 135196 | 0.7 | 0.849828 |
Target: 5'- gCGgagcAUGGCCGAggcggcGCAGAGGGccacGGCCGa -3' miRNA: 3'- gGCa---UACCGGCU------CGUCUUUCu---UCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 34319 | 0.7 | 0.849828 |
Target: 5'- aCGgggaGGCCGAGgGGccccAAGggGCCGg -3' miRNA: 3'- gGCaua-CCGGCUCgUCu---UUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 127021 | 0.7 | 0.85784 |
Target: 5'- gCGgc-GGcCCGAGCAGGGAGucGUCGa -3' miRNA: 3'- gGCauaCC-GGCUCGUCUUUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 23309 | 1.12 | 0.003785 |
Target: 5'- cCCGUAUGGCCGAGCAGAAAGAAGCCGa -3' miRNA: 3'- -GGCAUACCGGCUCGUCUUUCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 83033 | 0.7 | 0.85784 |
Target: 5'- cCCGggagGGCCGcucgccGCGGGAGGggGCUc -3' miRNA: 3'- -GGCaua-CCGGCu-----CGUCUUUCuuCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 74406 | 0.7 | 0.865637 |
Target: 5'- cCCGUuuucGGCCGcgGGCGGGAG--GGCCGa -3' miRNA: 3'- -GGCAua--CCGGC--UCGUCUUUcuUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 94697 | 0.7 | 0.873214 |
Target: 5'- aCCGaggacGUGGCCGAGCu---GGAGcGCCGc -3' miRNA: 3'- -GGCa----UACCGGCUCGucuuUCUU-CGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 21160 | 0.7 | 0.880564 |
Target: 5'- aCGgcccuGCCGAGCAGAGAuGcAGCCGc -3' miRNA: 3'- gGCauac-CGGCUCGUCUUU-CuUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 72196 | 0.7 | 0.883439 |
Target: 5'- gCGgc-GGCCGcgcgcGGCAGAAAGAacauggugucccgccGGCCGg -3' miRNA: 3'- gGCauaCCGGC-----UCGUCUUUCU---------------UCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 15311 | 0.69 | 0.887682 |
Target: 5'- gUCGUcgGaGCCGGGCccGucGAAGCCGu -3' miRNA: 3'- -GGCAuaC-CGGCUCGucUuuCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 98488 | 0.69 | 0.887682 |
Target: 5'- uCCGcg-GGCuCGGGCGGGuAAGguGCCGg -3' miRNA: 3'- -GGCauaCCG-GCUCGUCU-UUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 49480 | 0.69 | 0.894564 |
Target: 5'- -----aGGCCGcGCGGAAgcugcagcagaGGAGGCCGg -3' miRNA: 3'- ggcauaCCGGCuCGUCUU-----------UCUUCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 125367 | 0.69 | 0.894564 |
Target: 5'- ------cGCCGGGCAGAGGGgcGCUGg -3' miRNA: 3'- ggcauacCGGCUCGUCUUUCuuCGGC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 13695 | 0.69 | 0.901204 |
Target: 5'- gCGUggGGCgGGGCGGGcuGGggGCgGg -3' miRNA: 3'- gGCAuaCCGgCUCGUCUu-UCuuCGgC- -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 24546 | 0.69 | 0.907601 |
Target: 5'- aCGUAccUGGCCGGGCGGcgccAGGucccAGCCc -3' miRNA: 3'- gGCAU--ACCGGCUCGUCuu--UCU----UCGGc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 30828 | 0.69 | 0.91375 |
Target: 5'- cCCGgggacggGGCCGAGgAGGAGGAGGa-- -3' miRNA: 3'- -GGCaua----CCGGCUCgUCUUUCUUCggc -5' |
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23678 | 3' | -52.6 | NC_005261.1 | + | 60039 | 0.69 | 0.91375 |
Target: 5'- gCCGUcgGcGCCGAcggcgGCGGcGAAGAgcggcGGCCGg -3' miRNA: 3'- -GGCAuaC-CGGCU-----CGUC-UUUCU-----UCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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