miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 2570 0.71 0.815785
Target:  5'- gCGUGUGGuacuccCCGGGCGGcacgcggcGGAAGCCGc -3'
miRNA:   3'- gGCAUACC------GGCUCGUCuu------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 16395 0.71 0.82458
Target:  5'- gCCGUcgucGUcGCCGGGCGGugcgGGAGAGGCCc -3'
miRNA:   3'- -GGCA----UAcCGGCUCGUC----UUUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 25163 0.71 0.840776
Target:  5'- cCCGgggcGGCCGAGCGGGuuGGAucacgugGGCCu -3'
miRNA:   3'- -GGCaua-CCGGCUCGUCUu-UCU-------UCGGc -5'
23678 3' -52.6 NC_005261.1 + 135196 0.7 0.849828
Target:  5'- gCGgagcAUGGCCGAggcggcGCAGAGGGccacGGCCGa -3'
miRNA:   3'- gGCa---UACCGGCU------CGUCUUUCu---UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 34319 0.7 0.849828
Target:  5'- aCGgggaGGCCGAGgGGccccAAGggGCCGg -3'
miRNA:   3'- gGCaua-CCGGCUCgUCu---UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 127021 0.7 0.85784
Target:  5'- gCGgc-GGcCCGAGCAGGGAGucGUCGa -3'
miRNA:   3'- gGCauaCC-GGCUCGUCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 23309 1.12 0.003785
Target:  5'- cCCGUAUGGCCGAGCAGAAAGAAGCCGa -3'
miRNA:   3'- -GGCAUACCGGCUCGUCUUUCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 83033 0.7 0.85784
Target:  5'- cCCGggagGGCCGcucgccGCGGGAGGggGCUc -3'
miRNA:   3'- -GGCaua-CCGGCu-----CGUCUUUCuuCGGc -5'
23678 3' -52.6 NC_005261.1 + 74406 0.7 0.865637
Target:  5'- cCCGUuuucGGCCGcgGGCGGGAG--GGCCGa -3'
miRNA:   3'- -GGCAua--CCGGC--UCGUCUUUcuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 94697 0.7 0.873214
Target:  5'- aCCGaggacGUGGCCGAGCu---GGAGcGCCGc -3'
miRNA:   3'- -GGCa----UACCGGCUCGucuuUCUU-CGGC- -5'
23678 3' -52.6 NC_005261.1 + 21160 0.7 0.880564
Target:  5'- aCGgcccuGCCGAGCAGAGAuGcAGCCGc -3'
miRNA:   3'- gGCauac-CGGCUCGUCUUU-CuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 72196 0.7 0.883439
Target:  5'- gCGgc-GGCCGcgcgcGGCAGAAAGAacauggugucccgccGGCCGg -3'
miRNA:   3'- gGCauaCCGGC-----UCGUCUUUCU---------------UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 15311 0.69 0.887682
Target:  5'- gUCGUcgGaGCCGGGCccGucGAAGCCGu -3'
miRNA:   3'- -GGCAuaC-CGGCUCGucUuuCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 98488 0.69 0.887682
Target:  5'- uCCGcg-GGCuCGGGCGGGuAAGguGCCGg -3'
miRNA:   3'- -GGCauaCCG-GCUCGUCU-UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 49480 0.69 0.894564
Target:  5'- -----aGGCCGcGCGGAAgcugcagcagaGGAGGCCGg -3'
miRNA:   3'- ggcauaCCGGCuCGUCUU-----------UCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 125367 0.69 0.894564
Target:  5'- ------cGCCGGGCAGAGGGgcGCUGg -3'
miRNA:   3'- ggcauacCGGCUCGUCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 13695 0.69 0.901204
Target:  5'- gCGUggGGCgGGGCGGGcuGGggGCgGg -3'
miRNA:   3'- gGCAuaCCGgCUCGUCUu-UCuuCGgC- -5'
23678 3' -52.6 NC_005261.1 + 24546 0.69 0.907601
Target:  5'- aCGUAccUGGCCGGGCGGcgccAGGucccAGCCc -3'
miRNA:   3'- gGCAU--ACCGGCUCGUCuu--UCU----UCGGc -5'
23678 3' -52.6 NC_005261.1 + 30828 0.69 0.91375
Target:  5'- cCCGgggacggGGCCGAGgAGGAGGAGGa-- -3'
miRNA:   3'- -GGCaua----CCGGCUCgUCUUUCUUCggc -5'
23678 3' -52.6 NC_005261.1 + 60039 0.69 0.91375
Target:  5'- gCCGUcgGcGCCGAcggcgGCGGcGAAGAgcggcGGCCGg -3'
miRNA:   3'- -GGCAuaC-CGGCU-----CGUC-UUUCU-----UCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.