miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 98386 0.67 0.928539
Target:  5'- cGCAAUaCCGGCGugG-GGGCGggcGCGGa -3'
miRNA:   3'- uUGUUGaGGCUGCugCuCCUGC---UGCU- -5'
23679 5' -53.8 NC_005261.1 + 2385 0.67 0.93373
Target:  5'- cAGCGGCgcgCUGGCGGCGAGcGCGcccGCGGg -3'
miRNA:   3'- -UUGUUGa--GGCUGCUGCUCcUGC---UGCU- -5'
23679 5' -53.8 NC_005261.1 + 47877 0.67 0.93373
Target:  5'- cGGCAGCgUCCGgggaGCGGCGGcGGCGGCGc -3'
miRNA:   3'- -UUGUUG-AGGC----UGCUGCUcCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 67819 0.67 0.94338
Target:  5'- uGGCAACUCgGGCGcGCGcAGGAgGGCc- -3'
miRNA:   3'- -UUGUUGAGgCUGC-UGC-UCCUgCUGcu -5'
23679 5' -53.8 NC_005261.1 + 105147 0.67 0.94338
Target:  5'- cGCAGgUCCucGCGGCucGAGGGCGGCGu -3'
miRNA:   3'- uUGUUgAGGc-UGCUG--CUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 127637 0.67 0.94338
Target:  5'- cGCGACggCGGCGGCGccggGGGGCGcGCGGg -3'
miRNA:   3'- uUGUUGagGCUGCUGC----UCCUGC-UGCU- -5'
23679 5' -53.8 NC_005261.1 + 32328 0.67 0.938677
Target:  5'- cGCGGCgcCCGGCGugGccuGGGACG-CGGa -3'
miRNA:   3'- uUGUUGa-GGCUGCugC---UCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 103860 0.67 0.938677
Target:  5'- gAGCcGCggCGGCGGCG-GGGCGGCGc -3'
miRNA:   3'- -UUGuUGagGCUGCUGCuCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 110785 0.67 0.94338
Target:  5'- gAACGuGCUCCgGGgGACGGcGGGCGAgGAg -3'
miRNA:   3'- -UUGU-UGAGG-CUgCUGCU-CCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 118839 0.67 0.94338
Target:  5'- uGCcGCUCUG-CGGCgcgGAGGGCGGCGc -3'
miRNA:   3'- uUGuUGAGGCuGCUG---CUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 20572 0.67 0.938677
Target:  5'- cGCAGCggcgCCGGCGGCGcGGGugGccuACGu -3'
miRNA:   3'- uUGUUGa---GGCUGCUGC-UCCugC---UGCu -5'
23679 5' -53.8 NC_005261.1 + 69334 0.67 0.93373
Target:  5'- cGGCGACagCGACGGaGAcGGCGACGAc -3'
miRNA:   3'- -UUGUUGagGCUGCUgCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 110217 0.67 0.93373
Target:  5'- cGCAACcUCGGCGACGccuccagcguGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCUGCu---------CCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 53578 0.67 0.938677
Target:  5'- uAGCGGCcgcgggCCGGCGGCGccccagcGGAcCGACGAg -3'
miRNA:   3'- -UUGUUGa-----GGCUGCUGCu------CCU-GCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 121414 0.67 0.93373
Target:  5'- cGACGGCUgCCGcCGcCGcuacGGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGA-GGCuGCuGC----UCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 94746 0.67 0.936727
Target:  5'- -cCGACgCCGACGuggagaucugguuCGAGGACGugGc -3'
miRNA:   3'- uuGUUGaGGCUGCu------------GCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 68603 0.68 0.898917
Target:  5'- gAGCGGggCCGACGGCGuGGGgGAgGAu -3'
miRNA:   3'- -UUGUUgaGGCUGCUGCuCCUgCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 3848 0.68 0.88539
Target:  5'- cGGCAGCggcgCCGGCGccGCGcGGcCGGCGAg -3'
miRNA:   3'- -UUGUUGa---GGCUGC--UGCuCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 60313 0.68 0.89227
Target:  5'- -uCGGCUgaGACGAUcAGGugGACGAc -3'
miRNA:   3'- uuGUUGAggCUGCUGcUCCugCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 55996 0.68 0.89227
Target:  5'- cGGCAAC-CgCGGCGgggGCGGGGGCGGgGAa -3'
miRNA:   3'- -UUGUUGaG-GCUGC---UGCUCCUGCUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.