miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 22651 0.66 0.959805
Target:  5'- --aGACgcgCUGGCGGCGccuGGGCGGCGc -3'
miRNA:   3'- uugUUGa--GGCUGCUGCu--CCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 138056 0.66 0.963333
Target:  5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3'
miRNA:   3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 108452 0.66 0.963333
Target:  5'- gAGCAGCgcgUCGuCGGCGAGGAucuccgcguCGGCGc -3'
miRNA:   3'- -UUGUUGa--GGCuGCUGCUCCU---------GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 44423 0.66 0.947841
Target:  5'- cGCGuACgCCGACGACGuGGAgCGGCu- -3'
miRNA:   3'- uUGU-UGaGGCUGCUGCuCCU-GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 18779 0.66 0.947841
Target:  5'- cAACAGCagCGGCGAgggugccggcuUGAGcGGCGGCGGg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----------GCUC-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22530 0.66 0.959805
Target:  5'- cAACAACg-CGACGGagggcCGGGGccGCGGCGAg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----GCUCC--UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 82017 0.66 0.947841
Target:  5'- gAGCGGC-CCGuuGACGAGGuCGAaGAa -3'
miRNA:   3'- -UUGUUGaGGCugCUGCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 121715 0.66 0.947841
Target:  5'- --aGACgCCGACGGCGGGGGagaaGcCGAg -3'
miRNA:   3'- uugUUGaGGCUGCUGCUCCUg---CuGCU- -5'
23679 5' -53.8 NC_005261.1 + 136510 0.66 0.95605
Target:  5'- cGACGccuGCUCCGGCGAacaGAGGuccAgGAUGGa -3'
miRNA:   3'- -UUGU---UGAGGCUGCUg--CUCC---UgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43083 0.66 0.95605
Target:  5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3'
miRNA:   3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 133807 0.66 0.959805
Target:  5'- gGGCuGCUCgaCGGCGACGAGGcgcugcGCGGCc- -3'
miRNA:   3'- -UUGuUGAG--GCUGCUGCUCC------UGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 2834 0.66 0.952063
Target:  5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3'
miRNA:   3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 133709 0.66 0.952063
Target:  5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 81220 0.66 0.963333
Target:  5'- --gGACcaCCGugGcgccCGAGGGCGGCGGg -3'
miRNA:   3'- uugUUGa-GGCugCu---GCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 87407 0.66 0.947841
Target:  5'- cGACGGCgCCGuCGACGGGcGcgcCGGCGAa -3'
miRNA:   3'- -UUGUUGaGGCuGCUGCUC-Cu--GCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 103860 0.67 0.938677
Target:  5'- gAGCcGCggCGGCGGCG-GGGCGGCGc -3'
miRNA:   3'- -UUGuUGagGCUGCUGCuCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 105147 0.67 0.94338
Target:  5'- cGCAGgUCCucGCGGCucGAGGGCGGCGu -3'
miRNA:   3'- uUGUUgAGGc-UGCUG--CUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 85547 0.67 0.923103
Target:  5'- gGGCGGCUCCGucuGCGgcgccGCGAGGuuCGGCGc -3'
miRNA:   3'- -UUGUUGAGGC---UGC-----UGCUCCu-GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 32328 0.67 0.938677
Target:  5'- cGCGGCgcCCGGCGugGccuGGGACG-CGGa -3'
miRNA:   3'- uUGUUGa-GGCUGCugC---UCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 56964 0.67 0.938677
Target:  5'- cGCGGCUCCGGCaGugguucggcaGCGAGcGCGugGAc -3'
miRNA:   3'- uUGUUGAGGCUG-C----------UGCUCcUGCugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.