miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 20572 0.67 0.938677
Target:  5'- cGCAGCggcgCCGGCGGCGcGGGugGccuACGu -3'
miRNA:   3'- uUGUUGa---GGCUGCUGC-UCCugC---UGCu -5'
23679 5' -53.8 NC_005261.1 + 22064 0.67 0.922546
Target:  5'- cAGgGGCUCCGGCGGggcuCGAGGgggcgccGCGugGGg -3'
miRNA:   3'- -UUgUUGAGGCUGCU----GCUCC-------UGCugCU- -5'
23679 5' -53.8 NC_005261.1 + 22530 0.66 0.959805
Target:  5'- cAACAACg-CGACGGagggcCGGGGccGCGGCGAg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----GCUCC--UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22651 0.66 0.959805
Target:  5'- --aGACgcgCUGGCGGCGccuGGGCGGCGc -3'
miRNA:   3'- uugUUGa--GGCUGCUGCu--CCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 22694 0.72 0.698392
Target:  5'- gGACgGGC-CCGGCGACGAGGcCGuCGAg -3'
miRNA:   3'- -UUG-UUGaGGCUGCUGCUCCuGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 22892 1.07 0.006322
Target:  5'- aAACAACUCCGACGACGAGGACGACGAg -3'
miRNA:   3'- -UUGUUGAGGCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22919 0.75 0.564367
Target:  5'- --------gGACGACGAGGACGACGAu -3'
miRNA:   3'- uuguugaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22946 0.88 0.103483
Target:  5'- uGACGACga-GACGACGAGGACGACGAg -3'
miRNA:   3'- -UUGUUGaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 28654 0.69 0.863387
Target:  5'- uGACGAggCCGGCGGgGccGACGACGAc -3'
miRNA:   3'- -UUGUUgaGGCUGCUgCucCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 29338 0.73 0.657283
Target:  5'- cGCGugcGCUUCGGCGGCGcGGGCGACa- -3'
miRNA:   3'- uUGU---UGAGGCUGCUGCuCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 30680 0.66 0.959805
Target:  5'- gGACGGggaCGGgGACGGGGACGGgGAg -3'
miRNA:   3'- -UUGUUgagGCUgCUGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 30833 0.66 0.963333
Target:  5'- gGACGGggCCGAgGAgGAGGAgGAgGAg -3'
miRNA:   3'- -UUGUUgaGGCUgCUgCUCCUgCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 31440 0.7 0.813801
Target:  5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3'
miRNA:   3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5'
23679 5' -53.8 NC_005261.1 + 32328 0.67 0.938677
Target:  5'- cGCGGCgcCCGGCGugGccuGGGACG-CGGa -3'
miRNA:   3'- uUGUUGa-GGCUGCugC---UCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 34308 0.69 0.855618
Target:  5'- gAGCGAgaCCGACGGgGAGGcCGAgGGg -3'
miRNA:   3'- -UUGUUgaGGCUGCUgCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 34591 0.73 0.646932
Target:  5'- uGCGGCUUCGACGACGAcggccuGGcCGACGc -3'
miRNA:   3'- uUGUUGAGGCUGCUGCU------CCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 34791 0.73 0.667613
Target:  5'- gGAgGGCUCgGAgGAgGAGGAgGACGAg -3'
miRNA:   3'- -UUgUUGAGgCUgCUgCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 40665 0.7 0.839463
Target:  5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3'
miRNA:   3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 42172 0.7 0.839463
Target:  5'- aAGCGAg-CCGugGACGcAGGGCG-CGAg -3'
miRNA:   3'- -UUGUUgaGGCugCUGC-UCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 43083 0.66 0.95605
Target:  5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3'
miRNA:   3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.