miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 261 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 297 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 360 0.75 0.554191
Target:  5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3'
miRNA:   3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 385 0.66 0.963333
Target:  5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3'
miRNA:   3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 1108 0.73 0.657283
Target:  5'- -----gUCCGAgGACGcGGACGACGAg -3'
miRNA:   3'- uuguugAGGCUgCUGCuCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 1407 0.74 0.605489
Target:  5'- cGGCcGCggCGGCGGCGGGGGCGGCGc -3'
miRNA:   3'- -UUGuUGagGCUGCUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 2385 0.67 0.93373
Target:  5'- cAGCGGCgcgCUGGCGGCGAGcGCGcccGCGGg -3'
miRNA:   3'- -UUGUUGa--GGCUGCUGCUCcUGC---UGCU- -5'
23679 5' -53.8 NC_005261.1 + 2834 0.66 0.952063
Target:  5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3'
miRNA:   3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 3848 0.68 0.88539
Target:  5'- cGGCAGCggcgCCGGCGccGCGcGGcCGGCGAg -3'
miRNA:   3'- -UUGUUGa---GGCUGC--UGCuCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 4529 0.68 0.911495
Target:  5'- --gGGCgCCG-CGGCGAGGGCGcCGGg -3'
miRNA:   3'- uugUUGaGGCuGCUGCUCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 5107 0.71 0.795833
Target:  5'- cACAGCUCCGccagcuCGGCGcGGGCGGCc- -3'
miRNA:   3'- uUGUUGAGGCu-----GCUGCuCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 5512 0.7 0.831092
Target:  5'- cGCGGCagCGGCGGCGAGGcCGcCGGc -3'
miRNA:   3'- uUGUUGagGCUGCUGCUCCuGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 5998 0.71 0.758151
Target:  5'- cGCucCUCCcGCGGCGAGGGCuccGGCGAg -3'
miRNA:   3'- uUGuuGAGGcUGCUGCUCCUG---CUGCU- -5'
23679 5' -53.8 NC_005261.1 + 10602 0.78 0.402293
Target:  5'- cAGCGACUCCaGCaGCGAGGACGACu- -3'
miRNA:   3'- -UUGUUGAGGcUGcUGCUCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 10632 0.81 0.279539
Target:  5'- gGACGACUacgaggaCGACuACGAGGACGACGAa -3'
miRNA:   3'- -UUGUUGAg------GCUGcUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 10853 0.81 0.266476
Target:  5'- -cCAuCUCgGACGGCGAGGACGACGu -3'
miRNA:   3'- uuGUuGAGgCUGCUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 14123 0.65 0.96567
Target:  5'- -uCGGCUCgGGCGgugggcagucgcucGCGAGGACGcuccagccGCGAa -3'
miRNA:   3'- uuGUUGAGgCUGC--------------UGCUCCUGC--------UGCU- -5'
23679 5' -53.8 NC_005261.1 + 14355 0.68 0.905327
Target:  5'- cGGCAGCagCCG-CGGCcGGGGCGGCGc -3'
miRNA:   3'- -UUGUUGa-GGCuGCUGcUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 16460 0.68 0.898917
Target:  5'- -uCGACUCCucaaaguACGGCG-GGACGACGc -3'
miRNA:   3'- uuGUUGAGGc------UGCUGCuCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 18779 0.66 0.947841
Target:  5'- cAACAGCagCGGCGAgggugccggcuUGAGcGGCGGCGGg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----------GCUC-CUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.