miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 138056 0.66 0.963333
Target:  5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3'
miRNA:   3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 138031 0.75 0.554191
Target:  5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3'
miRNA:   3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 137980 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 137944 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 136613 0.69 0.870943
Target:  5'- gAGCGGCgCgCGcGCGcCGAGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGaG-GC-UGCuGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 136510 0.66 0.95605
Target:  5'- cGACGccuGCUCCGGCGAacaGAGGuccAgGAUGGa -3'
miRNA:   3'- -UUGU---UGAGGCUGCUg--CUCC---UgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 135124 0.71 0.786617
Target:  5'- cGCGuCUCCGcagcGCGGCGGGGGaGACGAc -3'
miRNA:   3'- uUGUuGAGGC----UGCUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 135059 0.7 0.804897
Target:  5'- cGGCAGCggcccgccgcuuUCCGGCGGCGGGcucgcggcccGGCGGCGGa -3'
miRNA:   3'- -UUGUUG------------AGGCUGCUGCUC----------CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 135027 0.72 0.698392
Target:  5'- cGCGGC-CgCGGCGGCGAGGcCGACGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 134968 0.73 0.657283
Target:  5'- cGGCGACgcaGACGGCGAGGACGGgGc -3'
miRNA:   3'- -UUGUUGaggCUGCUGCUCCUGCUgCu -5'
23679 5' -53.8 NC_005261.1 + 134835 0.82 0.253912
Target:  5'- -uCGGCUCCGACuGCGAGGAgGACGGg -3'
miRNA:   3'- uuGUUGAGGCUGcUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 133807 0.66 0.959805
Target:  5'- gGGCuGCUCgaCGGCGACGAGGcgcugcGCGGCc- -3'
miRNA:   3'- -UUGuUGAG--GCUGCUGCUCC------UGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 133709 0.66 0.952063
Target:  5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 130471 0.76 0.504252
Target:  5'- gAGCGGCUCgcggcgugccuCGGCGGCGAGGGCcccGACGAc -3'
miRNA:   3'- -UUGUUGAG-----------GCUGCUGCUCCUG---CUGCU- -5'
23679 5' -53.8 NC_005261.1 + 128872 0.69 0.847641
Target:  5'- ---cGCUgCCGACGACGAGG-CGGgGGc -3'
miRNA:   3'- uuguUGA-GGCUGCUGCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 128447 0.68 0.917421
Target:  5'- gAACAGCg-CGGCGgucGCGAGcACGACGAg -3'
miRNA:   3'- -UUGUUGagGCUGC---UGCUCcUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 127793 0.66 0.952063
Target:  5'- gAGCGGCgggCCGGCGcCGcGG-CGGCGGg -3'
miRNA:   3'- -UUGUUGa--GGCUGCuGCuCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 127637 0.67 0.94338
Target:  5'- cGCGACggCGGCGGCGccggGGGGCGcGCGGg -3'
miRNA:   3'- uUGUUGagGCUGCUGC----UCCUGC-UGCU- -5'
23679 5' -53.8 NC_005261.1 + 121715 0.66 0.947841
Target:  5'- --aGACgCCGACGGCGGGGGagaaGcCGAg -3'
miRNA:   3'- uugUUGaGGCUGCUGCUCCUg---CuGCU- -5'
23679 5' -53.8 NC_005261.1 + 121414 0.67 0.93373
Target:  5'- cGACGGCUgCCGcCGcCGcuacGGGGCGGCGGg -3'
miRNA:   3'- -UUGUUGA-GGCuGCuGC----UCCUGCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.