miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 14123 0.65 0.96567
Target:  5'- -uCGGCUCgGGCGgugggcagucgcucGCGAGGACGcuccagccGCGAa -3'
miRNA:   3'- uuGUUGAGgCUGC--------------UGCUCCUGC--------UGCU- -5'
23679 5' -53.8 NC_005261.1 + 43083 0.66 0.95605
Target:  5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3'
miRNA:   3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 116620 0.66 0.95605
Target:  5'- cGCAccgcccGC-CCGcCGACGAGGGCGAgGc -3'
miRNA:   3'- uUGU------UGaGGCuGCUGCUCCUGCUgCu -5'
23679 5' -53.8 NC_005261.1 + 82017 0.66 0.947841
Target:  5'- gAGCGGC-CCGuuGACGAGGuCGAaGAa -3'
miRNA:   3'- -UUGUUGaGGCugCUGCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 97824 0.66 0.95605
Target:  5'- cGCAGa--CGGCGgcaaaaACGGGGGCGGCGGg -3'
miRNA:   3'- uUGUUgagGCUGC------UGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43180 0.66 0.952063
Target:  5'- uACGGCgccgCCGGCGAggcaGAGGugGuGCGGc -3'
miRNA:   3'- uUGUUGa---GGCUGCUg---CUCCugC-UGCU- -5'
23679 5' -53.8 NC_005261.1 + 44423 0.66 0.947841
Target:  5'- cGCGuACgCCGACGACGuGGAgCGGCu- -3'
miRNA:   3'- uUGU-UGaGGCUGCUGCuCCU-GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 2834 0.66 0.952063
Target:  5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3'
miRNA:   3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 121715 0.66 0.947841
Target:  5'- --aGACgCCGACGGCGGGGGagaaGcCGAg -3'
miRNA:   3'- uugUUGaGGCUGCUGCUCCUg---CuGCU- -5'
23679 5' -53.8 NC_005261.1 + 88989 0.66 0.952063
Target:  5'- cGACAACUuucuccCCGGCGugaccaaguACGAGGGCGcCGu -3'
miRNA:   3'- -UUGUUGA------GGCUGC---------UGCUCCUGCuGCu -5'
23679 5' -53.8 NC_005261.1 + 86532 0.66 0.952063
Target:  5'- cGCAGCgcggguucCCGGCcACGuagGGGGCGGCGAu -3'
miRNA:   3'- uUGUUGa-------GGCUGcUGC---UCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 71409 0.66 0.950821
Target:  5'- aGGCGGCgUCCGGCG-CGGGGcccggcccgggcccGCGGCGc -3'
miRNA:   3'- -UUGUUG-AGGCUGCuGCUCC--------------UGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 72531 0.66 0.95605
Target:  5'- uGGCGGCUCgCugcGCGGCaGGGGACgGGCGAg -3'
miRNA:   3'- -UUGUUGAG-Gc--UGCUG-CUCCUG-CUGCU- -5'
23679 5' -53.8 NC_005261.1 + 133709 0.66 0.952063
Target:  5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 87407 0.66 0.947841
Target:  5'- cGACGGCgCCGuCGACGGGcGcgcCGGCGAa -3'
miRNA:   3'- -UUGUUGaGGCuGCUGCUC-Cu--GCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 60043 0.66 0.95605
Target:  5'- -uCGGCgCCGACGGCGGcGGcgaagaGCGGCGGc -3'
miRNA:   3'- uuGUUGaGGCUGCUGCU-CC------UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 47525 0.66 0.95605
Target:  5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3'
miRNA:   3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 90425 0.66 0.95605
Target:  5'- cGCGACgUUCGACGugGGcGGGCGcGCGc -3'
miRNA:   3'- uUGUUG-AGGCUGCugCU-CCUGC-UGCu -5'
23679 5' -53.8 NC_005261.1 + 127793 0.66 0.952063
Target:  5'- gAGCGGCgggCCGGCGcCGcGG-CGGCGGg -3'
miRNA:   3'- -UUGUUGa--GGCUGCuGCuCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 18779 0.66 0.947841
Target:  5'- cAACAGCagCGGCGAgggugccggcuUGAGcGGCGGCGGg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----------GCUC-CUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.