miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 22892 1.07 0.006322
Target:  5'- aAACAACUCCGACGACGAGGACGACGAg -3'
miRNA:   3'- -UUGUUGAGGCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22946 0.88 0.103483
Target:  5'- uGACGACga-GACGACGAGGACGACGAg -3'
miRNA:   3'- -UUGUUGaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 134835 0.82 0.253912
Target:  5'- -uCGGCUCCGACuGCGAGGAgGACGGg -3'
miRNA:   3'- uuGUUGAGGCUGcUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 10853 0.81 0.266476
Target:  5'- -cCAuCUCgGACGGCGAGGACGACGu -3'
miRNA:   3'- uuGUuGAGgCUGCUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 10632 0.81 0.279539
Target:  5'- gGACGACUacgaggaCGACuACGAGGACGACGAa -3'
miRNA:   3'- -UUGUUGAg------GCUGcUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 77762 0.79 0.336864
Target:  5'- cGCAGCcggGGCGGCGGGGACGACGAg -3'
miRNA:   3'- uUGUUGaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 51986 0.78 0.393684
Target:  5'- cGCGGCgccgccgCCGACuuCGAGGACGACGAc -3'
miRNA:   3'- uUGUUGa------GGCUGcuGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 10602 0.78 0.402293
Target:  5'- cAGCGACUCCaGCaGCGAGGACGACu- -3'
miRNA:   3'- -UUGUUGAGGcUGcUGCUCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 52978 0.77 0.447074
Target:  5'- uGCGGCgCCGGCaGGCGGGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUG-CUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 90122 0.77 0.447074
Target:  5'- cGCGGC-CCG-CGGCGAGGGCGAgGAg -3'
miRNA:   3'- uUGUUGaGGCuGCUGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 55218 0.77 0.456359
Target:  5'- cGGCGGC-CCGagGCGGCGAGGGCGGCa- -3'
miRNA:   3'- -UUGUUGaGGC--UGCUGCUCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 88803 0.77 0.456359
Target:  5'- cGCAGCaggacgCCGGCGGCG-GGGCGGCGGc -3'
miRNA:   3'- uUGUUGa-----GGCUGCUGCuCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 97943 0.76 0.504252
Target:  5'- -cCAGCUCCGGCGgcaACGAGGgaggugGCGGCGGa -3'
miRNA:   3'- uuGUUGAGGCUGC---UGCUCC------UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 130471 0.76 0.504252
Target:  5'- gAGCGGCUCgcggcgugccuCGGCGGCGAGGGCcccGACGAc -3'
miRNA:   3'- -UUGUUGAG-----------GCUGCUGCUCCUG---CUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43594 0.75 0.54407
Target:  5'- cGCGACgCCGucucCGGCGAGGAgGGCGAg -3'
miRNA:   3'- uUGUUGaGGCu---GCUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 138031 0.75 0.554191
Target:  5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3'
miRNA:   3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 360 0.75 0.554191
Target:  5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3'
miRNA:   3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22919 0.75 0.564367
Target:  5'- --------gGACGACGAGGACGACGAu -3'
miRNA:   3'- uuguugaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 96257 0.74 0.59516
Target:  5'- uGCAGCUCCcccuCGAguaCGAGGACGACGc -3'
miRNA:   3'- uUGUUGAGGcu--GCU---GCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 1407 0.74 0.605489
Target:  5'- cGGCcGCggCGGCGGCGGGGGCGGCGc -3'
miRNA:   3'- -UUGuUGagGCUGCUGCUCCUGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.