miRNA display CGI


Results 21 - 40 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 68228 0.73 0.636568
Target:  5'- cGGCGACcCUGACGGCGGGGGCGuguuCGu -3'
miRNA:   3'- -UUGUUGaGGCUGCUGCUCCUGCu---GCu -5'
23679 5' -53.8 NC_005261.1 + 34591 0.73 0.646932
Target:  5'- uGCGGCUUCGACGACGAcggccuGGcCGACGc -3'
miRNA:   3'- uUGUUGAGGCUGCUGCU------CCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 1108 0.73 0.657283
Target:  5'- -----gUCCGAgGACGcGGACGACGAg -3'
miRNA:   3'- uuguugAGGCUgCUGCuCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 134968 0.73 0.657283
Target:  5'- cGGCGACgcaGACGGCGAGGACGGgGc -3'
miRNA:   3'- -UUGUUGaggCUGCUGCUCCUGCUgCu -5'
23679 5' -53.8 NC_005261.1 + 29338 0.73 0.657283
Target:  5'- cGCGugcGCUUCGGCGGCGcGGGCGACa- -3'
miRNA:   3'- uUGU---UGAGGCUGCUGCuCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 34791 0.73 0.667613
Target:  5'- gGAgGGCUCgGAgGAgGAGGAgGACGAg -3'
miRNA:   3'- -UUgUUGAGgCUgCUgCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 135027 0.72 0.698392
Target:  5'- cGCGGC-CgCGGCGGCGAGGcCGACGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 22694 0.72 0.698392
Target:  5'- gGACgGGC-CCGGCGACGAGGcCGuCGAg -3'
miRNA:   3'- -UUG-UUGaGGCUGCUGCUCCuGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 56165 0.72 0.698392
Target:  5'- cAGCGGCggggCCcGCGGgGAGGACGACGc -3'
miRNA:   3'- -UUGUUGa---GGcUGCUgCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 137980 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 137944 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 88285 0.72 0.718641
Target:  5'- gGACGACgaCGGCGGCGccAGcGACGACGAa -3'
miRNA:   3'- -UUGUUGagGCUGCUGC--UC-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 297 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 261 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 5998 0.71 0.758151
Target:  5'- cGCucCUCCcGCGGCGAGGGCuccGGCGAg -3'
miRNA:   3'- uUGuuGAGGcUGCUGCUCCUG---CUGCU- -5'
23679 5' -53.8 NC_005261.1 + 117597 0.71 0.758151
Target:  5'- -uCGAUccugCCGACGAUGAcGACGACGAc -3'
miRNA:   3'- uuGUUGa---GGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 95085 0.71 0.767767
Target:  5'- cGCGAC-CgCGACGGCGAGGcCGAUGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 109107 0.71 0.786617
Target:  5'- --gGACgCCGGCcAUGAGGGCGGCGGu -3'
miRNA:   3'- uugUUGaGGCUGcUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 135124 0.71 0.786617
Target:  5'- cGCGuCUCCGcagcGCGGCGGGGGaGACGAc -3'
miRNA:   3'- uUGUuGAGGC----UGCUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 75864 0.71 0.795833
Target:  5'- cGGCGGCcCCGACGGCGccGugGGCGc -3'
miRNA:   3'- -UUGUUGaGGCUGCUGCucCugCUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.