Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 43083 | 0.66 | 0.95605 |
Target: 5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3' miRNA: 3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 47525 | 0.66 | 0.95605 |
Target: 5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3' miRNA: 3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 90425 | 0.66 | 0.95605 |
Target: 5'- cGCGACgUUCGACGugGGcGGGCGcGCGc -3' miRNA: 3'- uUGUUG-AGGCUGCugCU-CCUGC-UGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 2834 | 0.66 | 0.952063 |
Target: 5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3' miRNA: 3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 43180 | 0.66 | 0.952063 |
Target: 5'- uACGGCgccgCCGGCGAggcaGAGGugGuGCGGc -3' miRNA: 3'- uUGUUGa---GGCUGCUg---CUCCugC-UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 127793 | 0.66 | 0.952063 |
Target: 5'- gAGCGGCgggCCGGCGcCGcGG-CGGCGGg -3' miRNA: 3'- -UUGUUGa--GGCUGCuGCuCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88989 | 0.66 | 0.952063 |
Target: 5'- cGACAACUuucuccCCGGCGugaccaaguACGAGGGCGcCGu -3' miRNA: 3'- -UUGUUGA------GGCUGC---------UGCUCCUGCuGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 133709 | 0.66 | 0.952063 |
Target: 5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3' miRNA: 3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 86532 | 0.66 | 0.952063 |
Target: 5'- cGCAGCgcggguucCCGGCcACGuagGGGGCGGCGAu -3' miRNA: 3'- uUGUUGa-------GGCUGcUGC---UCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 71409 | 0.66 | 0.950821 |
Target: 5'- aGGCGGCgUCCGGCG-CGGGGcccggcccgggcccGCGGCGc -3' miRNA: 3'- -UUGUUG-AGGCUGCuGCUCC--------------UGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 18779 | 0.66 | 0.947841 |
Target: 5'- cAACAGCagCGGCGAgggugccggcuUGAGcGGCGGCGGg -3' miRNA: 3'- -UUGUUGagGCUGCU-----------GCUC-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 87407 | 0.66 | 0.947841 |
Target: 5'- cGACGGCgCCGuCGACGGGcGcgcCGGCGAa -3' miRNA: 3'- -UUGUUGaGGCuGCUGCUC-Cu--GCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 44423 | 0.66 | 0.947841 |
Target: 5'- cGCGuACgCCGACGACGuGGAgCGGCu- -3' miRNA: 3'- uUGU-UGaGGCUGCUGCuCCU-GCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 121715 | 0.66 | 0.947841 |
Target: 5'- --aGACgCCGACGGCGGGGGagaaGcCGAg -3' miRNA: 3'- uugUUGaGGCUGCUGCUCCUg---CuGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 82017 | 0.66 | 0.947841 |
Target: 5'- gAGCGGC-CCGuuGACGAGGuCGAaGAa -3' miRNA: 3'- -UUGUUGaGGCugCUGCUCCuGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 118839 | 0.67 | 0.94338 |
Target: 5'- uGCcGCUCUG-CGGCgcgGAGGGCGGCGc -3' miRNA: 3'- uUGuUGAGGCuGCUG---CUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 105147 | 0.67 | 0.94338 |
Target: 5'- cGCAGgUCCucGCGGCucGAGGGCGGCGu -3' miRNA: 3'- uUGUUgAGGc-UGCUG--CUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 67819 | 0.67 | 0.94338 |
Target: 5'- uGGCAACUCgGGCGcGCGcAGGAgGGCc- -3' miRNA: 3'- -UUGUUGAGgCUGC-UGC-UCCUgCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 127637 | 0.67 | 0.94338 |
Target: 5'- cGCGACggCGGCGGCGccggGGGGCGcGCGGg -3' miRNA: 3'- uUGUUGagGCUGCUGC----UCCUGC-UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 110785 | 0.67 | 0.94338 |
Target: 5'- gAACGuGCUCCgGGgGACGGcGGGCGAgGAg -3' miRNA: 3'- -UUGU-UGAGG-CUgCUGCU-CCUGCUgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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